FastQCFastQC Report
Tue 7 May 2024
EGAF00002877703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69163
Total Bases4.9 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9411.3605540534678946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4630.6694330783800587No Hit
GTTATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAGGGCAA1100.15904457585703338No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA880.12723566068562672No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTTAGGT830.12000636178303428No Hit
CACCGGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGC810.1171146422219973No Hit
AAAGAAGACTGTGGAATCTGTTTATCGGTGCCCATTATATCCTTAAGTTT740.10699362375836792No Hit
ATGTTGGGCCAGAGCATCCGGAGGTTCACAACCTCTGTGGTCCGTAGGAG720.10410190419733094No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)