FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69163
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8951.2940445035640444No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4380.6332865838670966No Hit
GTTATTAACCAGACTCAGAAAGAAAACCTCAGGAAATTCTACAAGGGCAAGAAGTACAAGCCCCTGGACCT900.13012738024666368No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTTAGGTCAAGAGTTGGAGACCAGCCTG790.11422292266096035No Hit
CACCGGATGTCATCTTTGTATTTGGATTCAGAACTCATTTTGGTGGTGGCAAGACAACTGGCTTTGGCATG770.11133120309992338No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG740.10699362375836792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)