FastQCFastQC Report
Tue 7 May 2024
EGAF00002877704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66682
Total Bases4.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25163.773132179598692No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3310.4963858312588105No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1130.16946102396448817No Hit
CTTATAATCTTTTACCTATTTCTTACAATTGCAAGATGACTGGCTTTACT1040.15596412825050238No Hit
GGTAAAGGCAGACCGAGATGAATCCTCACCATATGCTGCTATGTTGGCTG1020.15296481809183887No Hit
TCCTTTACCCTTGTAATTTGAAATTGTCACCTGTCTTTGAATGTTAATAA950.1424672325365166No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTC910.1364686122191896No Hit
CCCTTCGCCTGTGTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTCCTCC880.13196964698119432No Hit
GTATAGCACTGCCGATTGGCTAGGCCACTGTGTCTCTGCTACAAATTAAA810.12147206142587205No Hit
GTTTTAGGATCCTGCCTTATTAAGAGCCTGGACATATTTATAGAGGAAGT760.11397378602921326No Hit
CTCTAGCTTTGTCATAGTTATGTGATTTTCCTTTGTAGCTACTTTTGCAG760.11397378602921326No Hit
GTATAAGAAGGGCAAGGATTCTTTGTATGCCCAGGGAAGGAGGCGCTATG750.11247413094988153No Hit
GGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGA740.11097447587054977No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA740.11097447587054977No Hit
AAATAAAACATCGCTAAATAATTGATATTTGATGAAAATCTGCTTTGTAT710.1064755106325545No Hit
GTTTCAGGCCACAAAAAGAAAGGCGATGACCAGAGCCGGCAAGGCGGGGC690.103476200473891No Hit
GTATGTCACTCTGGTCCCTTTAAAGAGCAATCCTGGAAGAAGCAGGAGGG680.10197654539455925No Hit
CCTCTAGTGATACCTTGATCTTTCCCACTTTCTGTTTTCGGATTGGAGAA670.10047689031522751No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)