FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66682
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24553.681653219759455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3240.4858882457034882No Hit
GGTAAAGGCAGACCGAGATGAATCCTCACCATATGCTGCTATGTTGGCTGCCCAGGATGTGGCCCAGAGGT970.1454665426951801No Hit
CTTATAATCTTTTACCTATTTCTTACAATTGCAAGATGACTGGCTTTACTATTTGAAAACTGGTTTGTGTA920.13796826729852135No Hit
TCCTTTACCCTTGTAATTTGAAATTGTCACCTGTCTTTGAATGTTAATAAATTAATGGTGTCTATTGTTTT900.13496895713985782No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTCTTAACTATCCTAACAAGCCTT880.13196964698119432No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG810.12147206142587205No Hit
GTATAGCACTGCCGATTGGCTAGGCCACTGTGTCTCTGCTACAAATTAAAGAAATCCTAAAAGTTTTCCTT800.1199724063465403No Hit
CTCTAGCTTTGTCATAGTTATGTGATTTTCCTTTGTAGCTACTTTTGCAGGATAATAATTTTATAGAAAAG750.11247413094988153No Hit
GTTTTAGGATCCTGCCTTATTAAGAGCCTGGACATATTTATAGAGGAAGTGTTCCAGGTAGGAAATGTGGT750.11247413094988153No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAA720.10797516571188627No Hit
AAATAAAACATCGCTAAATAATTGATATTTGATGAAAATCTGCTTTGTATAATTTCTGTAAATTATCCTTG700.10497585555322277No Hit
GGTGAAAGCCATCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGATGGGAGCGCCCGAATCTGGCT690.103476200473891No Hit
GTATGTCACTCTGGTCCCTTTAAAGAGCAATCCTGGAAGAAGCAGGAGGGAGGGTGGCTTTGCTGTTGTTG670.10047689031522751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)