FastQCFastQC Report
Wed 8 May 2024
EGAF00002877705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150548
Total Bases10.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29521.9608364109785583No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12270.8150224513112098No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA2070.13749767516008185No Hit
GTATAAGCTGTAATATCATTTTATAGAAAATGCATTATTTAGTCAATTGT1650.10959959614209422No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)