FastQCFastQC Report
Wed 8 May 2024
EGAF00002877709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences214866
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA38711.8015879664535106No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9630.4481863114685432No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC2330.10843967868345852No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)