FastQCFastQC Report
Tue 7 May 2024
EGAF00002877712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98840
Total Bases7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26832.7144880615135576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5970.604006475111291No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC2280.23067583974099556No Hit
ACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATA1900.19222986645082962No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA1720.17401861594496154No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA1590.16086604613516794No Hit
ACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCA1580.15985430999595304No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG1390.14063132335087009No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACC1380.13961958721165518No Hit
CTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCT1350.1365843787940105No Hit
ATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACAC1340.13557264265479563No Hit
CCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATA1250.1264670174018616No Hit
CTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCT1210.12242007284500203No Hit
CCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGC1120.11331444759206798No Hit
ATTTATGATTCCCTGGATTATGCAAAGAAAAATGAACCCAAACATAGACT1110.11230271145285309No Hit
ACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATA1110.11230271145285309No Hit
GTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT1060.10724403075677863No Hit
GAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCC1000.10117361392148927No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)