FastQCFastQC Report
Wed 8 May 2024
EGAF00002877745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences816452
Total Bases57.9 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA49620.6077515885808351No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA23980.2937098567950106No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20080.24594219868406225No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG11190.13705643442602872No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC9860.1207664381984489No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA8420.10312914904979105No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)