FastQCFastQC Report
Wed 8 May 2024
EGAF00002877774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences217953
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA61172.8065683885975417No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12720.5836120631512298No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5970.273912265488431No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)