FastQCFastQC Report
Wed 8 May 2024
EGAF00002877777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1017983
Total Bases72.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77940.7656316461080391No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA28930.28418942163081307No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA21730.21346132499265705No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)