FastQCFastQC Report
Tue 7 May 2024
EGAF00002877780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35717
Total Bases2.5 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5241.4670885012739032No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3400.9519276534983341No Hit
ATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT460.12879021194389226No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC370.10359212699834813No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)