FastQCFastQC Report
Wed 8 May 2024
EGAF00002877783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2075462
Total Bases147.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC34

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1223095.8930975368375815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG127050.612152860423366No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA39600.19080089156052965No Hit
GGATATGACATGAAATAAAAGATCCAGCCCAAAAAAAAAAAAAAAAAAAA23520.11332416589655701No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)