FastQCFastQC Report
Wed 8 May 2024
EGAF00002877789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3494808
Total Bases248.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG242860.6949165733854336No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA91840.26278982994201683No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG41690.11929124575656232No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT36330.10395420864322161No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)