FastQCFastQC Report
Wed 8 May 2024
EGAF00002877795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences260160
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA109714.2170202952029525No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14570.5600399753997539No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC5360.2060270602706027No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGAGAGGCGAGG2630.10109163591635915No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)