FastQCFastQC Report
Wed 8 May 2024
EGAF00002877807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415868
Total Bases27.4 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA123502.969692306212548No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29700.7141689189839083No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA7930.19068550597785835No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)