FastQCFastQC Report
Wed 8 May 2024
EGAF00002877828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1605889
Total Bases105.9 Mbp
Sequences flagged as poor quality0
Sequence length66
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA309041.9244169428895772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG101220.6303050833525854No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC24270.15113124257031466No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)