FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35750
Sequences flagged as poor quality0
Sequence length66
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA35549.941258741258743No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1810.5062937062937063No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA390.1090909090909091No Hit
GTATTGCGCTCAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTAT390.1090909090909091Illumina Single End PCR Primer 1 (100% over 54bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)