FastQCFastQC Report
Tue 7 May 2024
EGAF00002877864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13292
Total Bases943.7 kbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9216.928979837496238No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG630.4739693048450196No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA290.21817634667469157No Hit
ATATTGTAGACATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCAC260.19560637977730969No Hit
GAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTA240.18055973517905505No Hit
GTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAA230.17303641287992777No Hit
GGTGTAATGTGCTTGTAAATCCAGCTACTCGGGAGGTTGAGGCAGGAAAA220.1655130905808005No Hit
GAAATTAGGCTTGTGGTTTACACCCATGGCTAGTAGGATTAAAGTTTGTT220.1655130905808005No Hit
GCATTTATATTCTTTCCATTTGCTATCATGTCAGTGAACGCCAGGAGTGC200.15046644598254588No Hit
GTCTTAAAAGGAACCTTTGTCTATAACAATTAGGAAGCCTTTGGTAGCCT200.15046644598254588No Hit
CTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCT200.15046644598254588No Hit
GCTATAAATGATTATTTTTTAAATGCTTTATAAATCTTCATGGTTTTTCT200.15046644598254588No Hit
AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTAT190.1429431236834186No Hit
ATATAATGTCTGCCACTTAATGGATTATTTACTACCTGAAAAAATAAACT190.1429431236834186No Hit
GTTGCATGCTTTCTGCCAGAGACCAGGAACAAGCCAAATATGTCTGCTGT190.1429431236834186No Hit
GATGAAGAATTAGGTATCCCTCCTGATGATGAAGACTGAAGGTGTAGACT180.1354198013842913No Hit
TTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAG180.1354198013842913No Hit
CCTCTACGAAGAACACACCAGAAATTTGTCATTGCCACTTCAACCAAAAT170.12789647908516402No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACC170.12789647908516402No Hit
GTCTACAATGCATCTAATAACGAGCTGGTTCGTACCAAGACCCTGGTGAA170.12789647908516402No Hit
CCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGAT170.12789647908516402No Hit
CCAGGAGGTTCTCCACTGTGGTGGTCTGGATTCAGTGATTGATTCTATTT170.12789647908516402No Hit
CTTCAAGGTCTTTACCCCAGAAGAAGCCGTGAACTTCATCTTGTCCTGTC170.12789647908516402No Hit
AGATTGACCTTAAGTTCATTGACACCACCTCCAAGTTTGGCCATGGCCGC160.12037315678603672No Hit
GAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATA160.12037315678603672No Hit
GGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTT160.12037315678603672No Hit
GTGGAGGATACCTACAGACACTGAAGTGTTACTAACAGTAGGATGCAGGC160.12037315678603672No Hit
GATTATTGTTTAATTTCAAAAGAATCCTCAGGCTCTACAATCTAGGGGTG160.12037315678603672No Hit
GAGACAGAACTCTCTCAGCTGACACTCTCAGAGATTCCTGATGGGCTTTC160.12037315678603672No Hit
ACATGGTGAAACCCCATCTCTACCAAAAATACAAAATTAGCCGGGTGTGA150.11284983448690941No Hit
TGACAATGGACCAAATGTGCCACACGCTCGCTCTTTTTTACACCCAGTGC150.11284983448690941No Hit
GTCCTCTGCCCTGGACCTGTGACATTCTGGACTATTTCTGTGTTTATTTG150.11284983448690941No Hit
CCTAACATGTGATTTAGTGCCTGGCACATAGTAGGTGCCCAGCAAAAATA150.11284983448690941No Hit
CATATAATGCATGTGTTCATACCAAGTAGAACAAAAATGGCCTTTTTTTC150.11284983448690941No Hit
GTATTAACCCCAGGACTCAGAAGTGAAGGAGAAATGGGTTTTTTGTGGTC150.11284983448690941No Hit
CTTTTGTCATATGTCATTTTTACTGTGGGCCAGATTTACAGTGATATGAT150.11284983448690941No Hit
CCCTATGGAATCACCCAGAGGGGTGCCTTGCCCTGGCTGAGGGACATGTA150.11284983448690941No Hit
GGAACAAACAGATCGAACAGTTTTGAAGCTACTGTGTGTGTGAATGAACA150.11284983448690941No Hit
ACGTGTGAGCACCCAAGGGTAACAACCAGATGGCTTCACTGAAACCTGCT150.11284983448690941No Hit
GGTTTCTTGGGGGATAGATTCAAGAGGAGTTGAGAATGTTTTATTCATTT150.11284983448690941No Hit
CAATAGAGCTGCATGGGTGTTTGTTGCATGAATCTCAATATTTAAAACAC150.11284983448690941No Hit
GCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAA150.11284983448690941No Hit
GAATATGTTCTAGACTGGTGATCTGAAAGCATCTGTAGTTTTCCTTATAC150.11284983448690941No Hit
CTCTCTCTCTTTGCCACAGAGACATTAATCCTAGAAGGCTATATCTTCTC150.11284983448690941No Hit
GTAAGAAGACCTTCGGGCAGAGACTGTTGGGTATGCTCCCTTCAGAAAAC150.11284983448690941No Hit
GCATGCTACTGTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCC150.11284983448690941No Hit
ATGTGAAGTATGCCGGAAAACATTTAAACGCAAAGATTACCTTAAGCAAC150.11284983448690941No Hit
TCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCC140.10532651218778212No Hit
CCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCG140.10532651218778212No Hit
GGATTACAGGTGCGTGCCACCACGCACCTGTAATCCCTGCTATTCGGGAG140.10532651218778212No Hit
GCCGACTGGAGCAGGCAGCAGCCCAGAAGCATCAGATGGTGAAGGAGAAG140.10532651218778212No Hit
AGACTTTGCTGTAGATGATCCACATGATGACAAGGAAGAGCAAGATCTGG140.10532651218778212No Hit
AGTCTGGGTCTTCCGAGGCCAGGAGCTTGCCTTTCCGCTGAGTCCAGATT140.10532651218778212No Hit
GTTCTAAATGTTAACACCTGTTGCATTTATATTCTTTCCATTTGCTATCA140.10532651218778212No Hit
GTGCTGAACACCAAATCAACCTAATTAAGGTTGATGACAACAAGAAACTA140.10532651218778212No Hit
ATATATGGATGCAGACGACTTGATGAAGATCTTAATTTTGTTTTTGGTTT140.10532651218778212No Hit
GCGAGTATTCCAAGGTGCTGGCCATTGCTCAGAACTTTGTGTGAGTTGAG140.10532651218778212No Hit
GTACTATTTTGTTTTATGACACTTTTGAGTCTATGCTGTATTGTTAAATA140.10532651218778212No Hit
GTCTCATTGTGCCATGAGGTAAATGTAATGTTTCAGGCATTCTGCTTGCA140.10532651218778212No Hit
AATGAAGAAAAATGTGCCAGAGAGCAAATTAGAGAGGCCACAAGTGAAAG140.10532651218778212No Hit
GTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAG140.10532651218778212No Hit
TGATGTATGGTTTTGAATCATCTAATAGCAATGTGGTATATAGTGTATAT140.10532651218778212No Hit
ATTGTAACTTGCATGTATCCATACCTGGATTTGGGATGAAATACTTAATG140.10532651218778212No Hit
CTGGATACATAAAAAATAAAAAGCAAAAACCTAAATCATATCACCAGAGC140.10532651218778212No Hit
GTACGAGACCAACCTGAGCAAAACAGGGAGACCCCGCCTATGCAAAAAAT140.10532651218778212No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC140.10532651218778212No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT140.10532651218778212No Hit
ATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAA140.10532651218778212No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)