FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13292
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8896.688233523924166No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG590.44387601564851037No Hit
ATATTGTAGACATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACT240.18055973517905505No Hit
GAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAGGGTTCGAGGGCACGA220.1655130905808005No Hit
GCATTTATATTCTTTCCATTTGCTATCATGTCAGTGAACGCCAGGAGTGCTTTCTTTGCAACTTGTGTAAC200.15046644598254588No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG200.15046644598254588No Hit
GGTGTAATGTGCTTGTAAATCCAGCTACTCGGGAGGTTGAGGCAGGAAAATCGCTTGAATCTGGGAAGCAG200.15046644598254588No Hit
GAAATTAGGCTTGTGGTTTACACCCATGGCTAGTAGGATTAAAGTTTGTTTTTGCCCTGTACAGCTGAGAA200.15046644598254588No Hit
GCTATAAATGATTATTTTTTAAATGCTTTATAAATCTTCATGGTTTTTCTATTTCTGATACACTCAGCTAT190.1429431236834186No Hit
AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTACTTCAAATTCCTCCCTGT180.1354198013842913No Hit
GTTGCATGCTTTCTGCCAGAGACCAGGAACAAGCCAAATATGTCTGCTGTCACTATTCTTATTCAACATAG180.1354198013842913No Hit
GTCTTAAAAGGAACCTTTGTCTATAACAATTAGGAAGCCTTTGGTAGCCTTTGAAAGTAGTTTGGGCACAA180.1354198013842913No Hit
TTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTT180.1354198013842913No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGAAGAGTCT170.12789647908516402No Hit
CCTCTACGAAGAACACACCAGAAATTTGTCATTGCCACTTCAACCAAAATCGATATCAGCAATGTAAAAAT170.12789647908516402No Hit
GTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCA170.12789647908516402No Hit
GATGAAGAATTAGGTATCCCTCCTGATGATGAAGACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGAG170.12789647908516402No Hit
CTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTC170.12789647908516402No Hit
CCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAGAACTAATCGCTGATCGTC160.12037315678603672No Hit
CCAGGAGGTTCTCCACTGTGGTGGTCTGGATTCAGTGATTGATTCTATTTTTCTATAGCAAAGCATTTTTG160.12037315678603672No Hit
GATTATTGTTTAATTTCAAAAGAATCCTCAGGCTCTACAATCTAGGGGTGGTAAATGTGTTTCCACTATAC160.12037315678603672No Hit
CCTAACATGTGATTTAGTGCCTGGCACATAGTAGGTGCCCAGCAAAAATATTTGTTGAGTACATATGTGAA150.11284983448690941No Hit
GTATTAACCCCAGGACTCAGAAGTGAAGGAGAAATGGGTTTTTTGTGGTCTTGAGTCACACTGAGATAGTC150.11284983448690941No Hit
GTGGAGGATACCTACAGACACTGAAGTGTTACTAACAGTAGGATGCAGGCATTATGTGAATGCGTGGGTAT150.11284983448690941No Hit
GTCCTCTGCCCTGGACCTGTGACATTCTGGACTATTTCTGTGTTTATTTGTGGCCGAGTGTAACAACCATA150.11284983448690941No Hit
ATATAATGTCTGCCACTTAATGGATTATTTACTACCTGAAAAAATAAACTTTGAGGCCAGATGCAGTAGCT150.11284983448690941No Hit
GAATATGTTCTAGACTGGTGATCTGAAAGCATCTGTAGTTTTCCTTATACTATGTATACATTTATTGTGGT150.11284983448690941No Hit
GGAACAAACAGATCGAACAGTTTTGAAGCTACTGTGTGTGTGAATGAACACTCTTGCTTTATTCCAGAATG150.11284983448690941No Hit
CTCTCTCTCTTTGCCACAGAGACATTAATCCTAGAAGGCTATATCTTCTCAAGTTAATGGTATTTTTGTTT150.11284983448690941No Hit
CATATAATGCATGTGTTCATACCAAGTAGAACAAAAATGGCCTTTTTTTCTCTCATATTTAAACTCCACAT150.11284983448690941No Hit
ACGTGTGAGCACCCAAGGGTAACAACCAGATGGCTTCACTGAAACCTGCTTTTGTAAATTACTTTTTTTTA150.11284983448690941No Hit
GGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTAGTAGTT150.11284983448690941No Hit
TGACAATGGACCAAATGTGCCACACGCTCGCTCTTTTTTACACCCAGTGCCTCTGACTCTGTCCCCATGGG140.10532651218778212No Hit
GTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCA140.10532651218778212No Hit
CCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTC140.10532651218778212No Hit
GAGACAGAACTCTCTCAGCTGACACTCTCAGAGATTCCTGATGGGCTTTCTCTTGAAGTCCAAAGGCGTCT140.10532651218778212No Hit
ATATATGGATGCAGACGACTTGATGAAGATCTTAATTTTGTTTTTGGTTTAAAATAGTGTTTCCTTTTTTT140.10532651218778212No Hit
CCCTATGGAATCACCCAGAGGGGTGCCTTGCCCTGGCTGAGGGACATGTACTGCCTCTCATCTAGAATTTA140.10532651218778212No Hit
GCGAGTATTCCAAGGTGCTGGCCATTGCTCAGAACTTTGTGTGAGTTGAGCCCAGGCCTCTGGTTGCAGGA140.10532651218778212No Hit
ATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAAAAGATAAATTTAAACCTGAAA140.10532651218778212No Hit
GCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAAAAAGAAGAGGTGGAACCGTCC140.10532651218778212No Hit
GTAAGAAGACCTTCGGGCAGAGACTGTTGGGTATGCTCCCTTCAGAAAACAGTTCTAAGAGGATGGAAGAC140.10532651218778212No Hit
CTTTTGTCATATGTCATTTTTACTGTGGGCCAGATTTACAGTGATATGATTCAAATTCCCTCATAAACTAT140.10532651218778212No Hit
GAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATAAGGTGGATGAGAATGGCAAAA140.10532651218778212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)