FastQCFastQC Report
Tue 7 May 2024
EGAF00002877865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16989
Total Bases1.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6343.7318264759550295No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG990.5827300017658484No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA680.4002589911118959No Hit
CAGTTAGTAATGGTGCTGGGTAATAAGCATAAGACCAATCTCTTGCTGTT320.188357172287951No Hit
GTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAA320.188357172287951No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC310.18247101065395255No Hit
GGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGT280.16481252575195715No Hit
GTCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTT280.16481252575195715No Hit
GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCT270.15892636411795866No Hit
GGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGC260.15304020248396022No Hit
AAAGAGAACTTGTTATTACTACTTTGGATGCTAATATGGAAAAAAATATG220.12949555594796633No Hit
CGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGG210.12360939431396785No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC210.12360939431396785No Hit
CTTCAAATACAGTGTGTAGTTGAAGATGATAAAGTTGGAACAGATATGCT210.12360939431396785No Hit
CACAGGCACTCTGCCTGCTTGGAGGTGTTCGCTGGCTCGCTCAGACTGAC200.1177232326799694No Hit
GTACAGATTTAAAAACAAATCTTGTTGCTGATTTGCCCATTTCTTTCCCT200.1177232326799694No Hit
CACTTCAATTTTGCAATCGTTTTTACAGATGTTAAAAGACCTGGCTATCG200.1177232326799694No Hit
TACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACT200.1177232326799694No Hit
GTGTAACATCACATAGTAATGTGTATTTTGTCTTGACTAAGTTGTGTAAA190.11183707104597092No Hit
GTGTGTGAGTGTGTGAAGCCGCCAGTTCATCTTTTTATATGGGGTTGTTG190.11183707104597092No Hit
CATGGGGCCTGAACATGCAGGCAGCTCAGCCTAAGGGGAATCCAGTTGCT190.11183707104597092No Hit
GTATAGAAGATAGAAAAATATAAAGCCAAAAATTGGATAAAATAGCACTG190.11183707104597092No Hit
TGCCAAAAGTGCGGCCACAAGGAGGCTGTGTTCTTCCAGTCACACAGTGC190.11183707104597092No Hit
TTCCCTACACGACGCGGGCTGATTAACAGCTAAGTAAATTCTATAGTACT190.11183707104597092No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC190.11183707104597092No Hit
GTATTTACCAATAAAGGAAGCAGTTTGTGAGAAGCTAATATTTCCAGAAA190.11183707104597092No Hit
GAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCA190.11183707104597092No Hit
AGTATGGCCCATACACAGGTAAAAAAAGAAATTAATAGAAACTACCCCTG180.10595090941197245No Hit
CTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAG180.10595090941197245No Hit
CAAGAAATACCGTGCCCTGAGGTTGGACGTGGGGAATTTCTCCTGGGGCT180.10595090941197245No Hit
GCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGA180.10595090941197245No Hit
GTCGTAAGGGCTGAGGATTTTTGGTCCGCACGCTCCTGCTCCTGACTCAC180.10595090941197245No Hit
ATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTT170.10006474777797397No Hit
TCCCTACACGACGCGGGATGGTCAGTAAAATATAAAAACATGTTTTTATG170.10006474777797397No Hit
GTTCATGACCAACCGACTACTTCAGAGGAAACAAATGGTCATTGATGTCC170.10006474777797397No Hit
AGCTGGTTCGTACCAAGACCCTGGTGAAGAATTGCATCGTGCTCATCGAC170.10006474777797397No Hit
GTAATAAGCAGTGCTTGAATTATTTGGTTTCGGTTGTTTTCTATTAGACT170.10006474777797397No Hit
GTGTATACCTGTGTAACAAACCTGCACTTTCTGTACATGTGTCCCAGAAC170.10006474777797397No Hit
AAGTACAAGCCCCTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCG170.10006474777797397No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)