FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16784
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4912.925405147759771No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1020.607721639656816No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACC260.15490943755958056No Hit
GATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCA260.15490943755958056No Hit
ACCCAGATTGCTGCTAAGCCTAACATGAGCTTTGCATAGCCATTGAAAAAGGTTCCCACACTCTAGAATTT260.15490943755958056No Hit
ACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCA240.14299332697807435No Hit
ATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCA230.13703527168732124No Hit
GATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCAC230.13703527168732124No Hit
CCAGTGAGTTGTATAAACTTTATTTTTGTTGAAGGTTGTATGTTAAATCAATGTTACATTCTTATATCACT210.12511916110581506No Hit
GGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTTTCTCTTTTGGC200.11916110581506197No Hit
GCATAAGACTTGTCTTGAAGTATTTTATTGACTAGTCAATGAGTCAAATGTGTAAACAAATAGATGTAACA200.11916110581506197No Hit
CCTCTGAGACCCACCTTGCTCATAAACAAAATGCCCATGTTGGTCCTCTGCCCTGGACCTGTGACATTCTG200.11916110581506197No Hit
GAAGAGGAGCCTGGGCAAGGTGCCCAAGTGGCTGAAGCTGCCGGCCAGCAAGAGGTGAGAGCTGCCAGCCT190.11320305052430887No Hit
CCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGC190.11320305052430887No Hit
CTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAA180.10724499523355577No Hit
GTTGTCTACAATGCATCTAATAACGAGCTGGTTCGTACCAAGACCCTGGTGAAGAATTGCATCGTGCTCAT180.10724499523355577No Hit
GTTCTCAGATGCTGGCCAGCCTATGAGTTTTGTCTTAGAATTTCACTTTGAACCCAATGAATATTTTACAA180.10724499523355577No Hit
AGTTGATAGACATGTAGATTGTTTTCATGCTGCTGTGACCATTTGTGTACAAGTGTTTGTGCAGACATATG180.10724499523355577No Hit
CACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCAC170.10128693994280266No Hit
GTCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCG170.10128693994280266No Hit
ATTTCTGTGTTTATTTGTGGCCGAGTGTAACAACCATATAATAAATCACCTCTTCCGCTGTTTTAGCTGAA170.10128693994280266No Hit
GTTTTATAAGCTTTTCCCTGTTTTTAGTTTTGTTTTGGGTTTTTTGGCTCATGAATTTTATTTCTGTTTGT170.10128693994280266No Hit
TAACTGGACTGTCTCGTTTAGACTGTATACATCATATCTGACATTATTGTAACTACCGTGTGATCAGTAAG170.10128693994280266No Hit
TCCTCAGCCTCCCAAAGTGATGGGATTACAAGCGTGAGCCACCGCGCCCAGCCGGAAAGTTTTTTTAAAGA170.10128693994280266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)