FastQCFastQC Report
Wed 8 May 2024
EGAF00002877877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107131
Total Bases7.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11911.1117230306820622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3200.2986997227693198No Hit
GTACTATATAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG1690.15775079108754703Illumina Single End PCR Primer 1 (100% over 41bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)