FastQCFastQC Report
Tue 7 May 2024
EGAF00002877882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84925
Total Bases6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20372.398586988519282No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3900.4592287312334413No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA2140.2519870473947601No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTC1670.1966440977332941No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC1040.12246099499558434No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA950.11186340889019722No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG900.10597586105387105No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)