FastQCFastQC Report
Tue 7 May 2024
EGAF00002877883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34459
Total Bases2.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10322.9948634609245772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1930.5600858991845381No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA920.26698395194288865No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC500.14509997388200468No Hit
GGTATGAAGATCGGGCGGATTGAGGATGTCACCCCCATCCCCTCTGACAG410.11898197858324386No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG370.10737398067268349No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACC360.10447198119504339No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)