FastQCFastQC Report
Tue 7 May 2024
EGAF00002877890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14685
Total Bases1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3742.546816479400749No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG500.34048348655090227No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA300.20429009193054137No Hit
TATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAA300.20429009193054137No Hit
GTGTTGGCTACTCTAAGCCTTCAAATTGTTGCTTTTCCCCTTCAACAGGG290.1974804221995233No Hit
CTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCA280.19067075246850526No Hit
GAATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAA230.15662240381341505No Hit
TTTCTACTTGGTATTAAAATTCCCTTACAGATTCATTGCTAAGTGCCAAT230.15662240381341505No Hit
GTTCAACATATGAAGAAGAAACGAACAAAATCAAACATAGGAATATTGAC230.15662240381341505No Hit
GCATATGCCATATATGAGCTGGCTGTGGCTTCATTTCCCAAGAAGCAGGA220.149812734082397No Hit
GTTCATAATGGCATTTCTAAAGCTTTTGGACACTGTGTACCAGGATGAGG210.14300306435137897No Hit
GATGATGGCTGTATGAGGAAAACGATGTAAATAGAGAATACAAATTAAAC210.14300306435137897No Hit
ACTCAGTGTGGTGATGGCACCTCCCTGAATCTCCTGACAAATGCGAACAG200.1361933946203609No Hit
AGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAGGAGGCTAAG190.12938372488934285No Hit
CACATGGGGTGAGAAGAGGAACCTTGGCAGTAGGAGATACCTTTGTACCA190.12938372488934285No Hit
TATGTATATAAAGCAAAGAACAACACAGTCACTCCTGGCGGCAAACCAAA190.12938372488934285No Hit
CTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTG190.12938372488934285No Hit
ATGTTTATCTTCATTGACAAATTTACCCACCATCTGTGGTTTTTCAGTTG190.12938372488934285No Hit
CCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTAC190.12938372488934285No Hit
AGTCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGTA190.12938372488934285No Hit
ATGCTAAACTTTTGGCCAAGAGAATGAAGGAGGCTAAGGAGAAGCGCCAG180.12257405515832481No Hit
AGCCATGAACCATTTCCTGGACATTGGGCCTATATTGCAGGGTTTGATGA180.12257405515832481No Hit
ATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT180.12257405515832481No Hit
ACTTAGAATCTAAAATTTGTTATTCAAATTAAATGACTGTGAACAATGTT180.12257405515832481No Hit
ATCCTGTGCTAACAACTTTGCAATGAAAGGAAAGCGGAAGACGCTGAATG180.12257405515832481No Hit
TCTATAAAGAGCTCCTCATCTCCTTAGTGGCCTCACTCTTCATGGGCTTT180.12257405515832481No Hit
GCATGATCTTGGCTCACTGCGACCTCCGCCTCCCAGGTTCAAGTGATTCT180.12257405515832481No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACC180.12257405515832481No Hit
TCTACAGACAGTTCAAGGAAATTGCTGCAGTTATTGAAACGGTGTGAAGA180.12257405515832481No Hit
ATACAGAAGAATACATAGATGGAGCTTTGTCTGGACATCTGGGTGAAGTT180.12257405515832481No Hit
GGGCTGAAGGATCCTGTTCCCAGTGGGTTTTCTGCAGGGGAAGTTCTGAT180.12257405515832481No Hit
ATAAGAGGTGGACACAACAGCAGTCTCCTTCAGCACGGCGTGGTGTGTCC170.11576438542730677No Hit
GGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGA170.11576438542730677No Hit
CCTTAACCATGATTATTAACTAAGTTTGTGGCTTGAGTTTACAAATTCTA170.11576438542730677No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA170.11576438542730677No Hit
GACTTACATAATGAAAACCAATTCATTTTAAATATCAGATTATTATTTTG170.11576438542730677No Hit
CAAAAAATTAGCCAGGCATGCATCGTGGCGGGCTCCTGTAATCCCAGCTA170.11576438542730677No Hit
TCCCAGTACTTTAGGAGGCCGAGACTGGTAGATCATTTGAGGTCAGGAGT170.11576438542730677No Hit
TTCCATATGAACACACAAAACCTATCCCTCGGCCAGATCCTGTGCATAAT170.11576438542730677No Hit
GTGCATAATAATGAAGAAACACATGATCAAGTGCTGAAAACCAGATTGGA170.11576438542730677No Hit
GGCCTGGCCAGCAGGTAGCCTGTGTGTTTGACAAACAGCAGCTGGCAGCG170.11576438542730677No Hit
GGAAAAGCTTGAAGCCACCATTAATGAATTAGTCTAATCATGTTTTCTGA170.11576438542730677No Hit
GTACAAGCCCCTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCC170.11576438542730677No Hit
CTCTACAATCAGTCATGATACCTACACTTCCATCAATTCTGGGTACCCAT170.11576438542730677No Hit
GGAATAAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACG170.11576438542730677No Hit
AATATAACAATGCTGGTTCCTGGAGGAGAAGGACCTGAAGTGTGAATGAG170.11576438542730677No Hit
ACCCAGCCCTGTGCTGGCAGCACGTTACCAACCAGCCTGCGTGAAGACCT170.11576438542730677No Hit
CTCCACATCTTGTCCCACTGGAAAGTCTTCAGGGGCAATAACAGGCATGG160.10895471569628873No Hit
GAAGAGAAACCATCCTCTCCCTTCTTACACCGTGAGGCCAAGATCCCCTC160.10895471569628873No Hit
TCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATA160.10895471569628873No Hit
CTTTATTGCCTGGGCAGTTTTGCTTGATCTTTTGTGACTTTGAGCCTTTT160.10895471569628873No Hit
TCTCTGGTTTGCAGTGTAATGAGTTCATAAGCTAAATTTTCAGAAAGAAT160.10895471569628873No Hit
CTTAAGAGCCAGAGCCATATAAGCATCTTGGGAAAGCAAGTTTGAACCAG160.10895471569628873No Hit
ATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAA160.10895471569628873No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT160.10895471569628873No Hit
CCTTCAGTTCTTCGGATGAAAGGTGCTATATTCCCTCAGTGTAAATTAAT160.10895471569628873No Hit
GAAGATATTATATGAAGGTACCCACCTCGATCCTGAAAGAAAACACAACG160.10895471569628873No Hit
GTCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTT160.10895471569628873No Hit
AAATTTAACTGGTTTTTACTACTGATGACTTGATTTAAAAAAAAATACAA160.10895471569628873No Hit
ATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAA160.10895471569628873No Hit
ATACAAAATTAGCCGGGCATGGCACCTCATGCCTGTAATCCCAGCTACTT160.10895471569628873No Hit
TATTAACACAGTTTACTATAAATGTACAGATTGTTACAATGCACTCCCTA160.10895471569628873No Hit
ATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACA150.10214504596527069No Hit
GTATTAAAATTCCCTTACAGATTCATTGCTAAGTGCCAATTCTTTTTTTT150.10214504596527069No Hit
GAGCTAGAGGCAGGCAGGGCAGTTGGGTCCCTTGCCAGCTGCTATGGGGC150.10214504596527069No Hit
GTATCTATGTCTCTGAAAAAGGAACTGTTCAGCAGGCTGATGAATAAGAT150.10214504596527069No Hit
GGATTGTCTTTAAACAGCCATTCAGAAACAAAACTGTAGAACTGTGTATT150.10214504596527069No Hit
TTCATAGTCTATACTTGATACATTCCCACTTTATATACAGTAGGATTCTA150.10214504596527069No Hit
GTATACATCTCCTTGAGAACAGTGGAAGATCAAAGAACTTTTCTTATAAC150.10214504596527069No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA150.10214504596527069No Hit
GTTTTGAGGGGTAATGATGAGACTATTGGATTTGAGGATATTCTTAATGA150.10214504596527069No Hit
GAGTAATCCAGGTCGGTTTCTATCTACTTCAAATTCCTCCCTGTACGAAA150.10214504596527069No Hit
ATACATTGCTTTCCGCATTTCAAGACATCCAGACGCTATTACCAACATTT150.10214504596527069No Hit
GTCTTAACAGGGCGCTCACCTGACCTCTCCTTCATTTGAGAGATGAGGGT150.10214504596527069No Hit
GGAACAACACCTAAACCCAAGAGGGCAGCTGTTGCAGCATCCAGTTCATC150.10214504596527069No Hit
ATAAAGAACAGCGTAACTCCAGACATGATGGAGGAGATGTATAAGAAAGC150.10214504596527069No Hit
ATCATCCACCAAGAGTGGAAAATTTATGAACCCCACAGACCAAGCCCGAA150.10214504596527069No Hit
CTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCAT150.10214504596527069No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)