FastQCFastQC Report
Tue 7 May 2024
EGAF00002877922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12300
Total Bases873.3 kbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5174.203252032520325No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG710.5772357723577236No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA500.40650406504065045No Hit
ATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAAC300.24390243902439024No Hit
GTTCTAAGACGTGGGATCGTTTCCAGATGAGAATTCACAAGCGACTCATT260.21138211382113822No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG240.1951219512195122No Hit
GGCATTACTGTAGTCAGTCATTTTGGTTTTCTTCTATAGCCATTTTATTA240.1951219512195122No Hit
GACGTGCAACTCAAAGACCTGGAAAAATGGCAGAATAATCTGCTTCCATC230.18699186991869918No Hit
CCTCATAGGCAGGCTAAACAAGTGTGGGGTGATCAGCCCCAGATTTGACG220.17886178861788618No Hit
GCATACAGACTGGAAGAACAGCCCTGTATGGGTCCTTAGAAGCATCTATA220.17886178861788618No Hit
TAATGATGGTGTCTGTACAGCATGGATGTGGACAGGGAAAACAGCAAGTG210.17073170731707318No Hit
CAGCTAAGTGAAGGATCAATTACACTTCAGGTTGAAGCAGTAGAGAGTAC210.17073170731707318No Hit
GGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGT210.17073170731707318No Hit
AGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATC210.17073170731707318No Hit
CAGTCACGGAGGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAAT200.16260162601626016No Hit
GGTGTTAATACTTTCAAAGTTCTTACAAGGGATAAACGTCTTGTACCCGG190.15447154471544716No Hit
GATTTAGGGTAGATAAGGCAGTGGCATTCTGACTCCATTAGTTTCTCTTT190.15447154471544716No Hit
CCTGTAGCCTGGCAAAAACGACATTTGATGAAGCAATTGCTGAATTGGAT190.15447154471544716No Hit
ATCCTGGCTAACACGGTGAAGCCCCGTCTCTACTAAAAAAAAATACAAAA190.15447154471544716No Hit
GACCCAAACAAAAAAATAATAATCAAATGCCTTCAATTTCTGAGAAAATG190.15447154471544716No Hit
GGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGA190.15447154471544716No Hit
GATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGC190.15447154471544716No Hit
CTATTTAAATCAGAACCCAATTTCTACGCGTGTTGAATAAGGTAACAGCC190.15447154471544716No Hit
GAGGGAGACCATACTAGGGCGACTCCTGTGTGACTGAAGTCCCAGCCCTT190.15447154471544716No Hit
GTCCAAGATAGTATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCT190.15447154471544716No Hit
CTCTTGCCCTTCGCCTGTGTGCCTGGAGCCAGTCCCACCACGCTCGCGTT180.14634146341463414No Hit
CTCCTAGGCTCTATCAGACTGACCCCTCGGGCACATACCATGCCTGGAAG180.14634146341463414No Hit
ATGTATGCATATATACATACGTATATATACAGTCGGGTCGAAACCACCCT180.14634146341463414No Hit
AGGGAAAAAAGACTGAAATAAACTGAACAGAATATCCAAGAACTGTGGAA180.14634146341463414No Hit
GGTTGACAGAGCAATATTCCATCTCAAAAAATAAAAAATAAAAATAAAAA170.13821138211382114No Hit
CCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATA170.13821138211382114No Hit
GGTGTGCACACACTCCTCTCAAGAGCTGCCATTTTATGTGTCTCTTGCAC160.13008130081300812No Hit
ATCCAAGATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGC160.13008130081300812No Hit
GAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGAAGAAGCTGGG160.13008130081300812No Hit
GAGTATACACCATGAGCAAAGCTCACCCTCCCGAGTTGAAAAATGAAATT160.13008130081300812No Hit
ATGGAGTACAAGGGCTATCTGGTATCTGTAGATGGCTACATGAACATGCA160.13008130081300812No Hit
ATTCCAGCCTGGGCAACACAGTAAGGCCCTGTCTCTAAAAAAACTAAGCA160.13008130081300812No Hit
GTGCATATCTGAATCATTTGGAGAGTTTTGTGTGTGCACACAGGCATGCC160.13008130081300812No Hit
TTCCAACTGTCAGCATGATTTCCAGGCTCCATATCTTCTACATGGAAAAT160.13008130081300812No Hit
ATTTAATACAAGGCTGTTTAAGGTCAAAGAAAGACACTTGTTTCTTACCT160.13008130081300812No Hit
ATTAAGGAGAGATGACCTATCTTTAAGTGCAAGAAAGCCTTTGAGGTGAA160.13008130081300812No Hit
CCCTCCTGTATAGAGCCACCATGATTCTTACAGTTGGTGGAACAGCATAT160.13008130081300812No Hit
TTCTGAAACTGGCCCAATTTCCTAACAAGCCGGATGCTTGAGAAACCTAC160.13008130081300812No Hit
GAATACAAGTAGAATCACAGAGCTGAAGGAAGAAATAGAAGTAAAAAAGA160.13008130081300812No Hit
GCCATCACACTTGCTTATTGAATGTCTTGCTCATTATGATAGCTTAGTAC150.12195121951219512No Hit
AAGCAAAGGAGGAGAAAGAGAAGAAGATTTACTACCACCCATGGACCGGA150.12195121951219512No Hit
AAGCAGTGCTAGTAAATATTTCAAATGGATGATGGTTGAAATAAAAAAGA150.12195121951219512No Hit
GTGTATAACATTCACCTGGCTGTCAACTTCTTGGTGTCATTGCTCAAGAA150.12195121951219512No Hit
GTATATGGATTCTATGAAAAAATGTCCACAACACAGTAATTGGTCACTTG150.12195121951219512No Hit
GGCAGGCGCTGAGAAGGAGGCGCAGTCCATCTCTCTCAGGGTTAGTGAAT150.12195121951219512No Hit
CCCTGAGGCATCTGAGTCAACAACGGATGAAAATGAAGACGACATTCAGT150.12195121951219512No Hit
CAAGAGGCCTCCTTCGGCCTTCTTCCTCTTCTGCTCTGAGTATCGCCCAA150.12195121951219512No Hit
CTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAGGCTGCAGAATATGC150.12195121951219512No Hit
AATTTATGTAGTCTTTTGTGACTGGCTTCTTTTACTTAGGATGTTTTTAA150.12195121951219512No Hit
GTTTATTACTGAAGATTGATCCATTGTTGCCTAAAGAAGTAAAAAATGAA150.12195121951219512No Hit
GGCTTACTCCAACTGAAGTTAAGGATTACTTGGCTGCCATAGCATAACAA140.11382113821138211No Hit
GCACTACATGTAAATTAAGCCCAAAGATGGGGAGAAAGGAAAAGGAGAGA140.11382113821138211No Hit
TTATTGTATTTTTTGAAAAATTTATACTAGAACGTGGTATATATGTCTGT140.11382113821138211No Hit
ATTCACAAGCGACTCATTGACTTGCACAGTCCTTCTGAGATTGTTAAGCA140.11382113821138211No Hit
GATTAAATATTTGAAGCAGGAACAACAGAAATTTTCCTGCAAATTAATGT140.11382113821138211No Hit
GGAAAAGGCCCAGGCTCTAGAAGACCTGGCTGGCTTTAAAGAGCTCTTCC140.11382113821138211No Hit
ATATCTCTGTGTACGAATGGTACCAGCGTGTGTACCAGTCCCTCTGCCCC140.11382113821138211No Hit
GTGTAACATACTCCCCACAGTCTACTTTTACAAACGCCTGTAAAGACTGG140.11382113821138211No Hit
GAGTATCAGCAAGAGCTGGAGAGGGAGCTTTTTAAGCTCAAGCAAATGTT140.11382113821138211No Hit
GTATAAGTTTCGTGTGGCTGATCAAAGAAAGAAGGCATACGCAGATTTCT140.11382113821138211No Hit
GAACAAAGATAAGGAAATGGCAGGAGTGTTGCAGAAAGCAGTGGTTTCTG140.11382113821138211No Hit
GTGAGAGACCGAATAGAGGGGCTGGGGCCACGAGCGCCATTGACAAGCAA140.11382113821138211No Hit
GGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGA140.11382113821138211No Hit
GATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCA130.10569105691056911No Hit
CTATATATATATCTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTA130.10569105691056911No Hit
CTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGAT130.10569105691056911No Hit
GAATAATCTACCCTGACTAAAGCTTGAAATGCTACATTTCCAAGGTGAAG130.10569105691056911No Hit
ATCAGGAAAGGCTCCGGAAGAGACCGGACTTTAGCCCGGCTTGGAGGGAA130.10569105691056911No Hit
TTCTTCGCCAGGCCAGGAATCACAAGCTCCGGGTGGATAAGGCAGCTGCT130.10569105691056911No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA130.10569105691056911No Hit
TCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACCATGTTCATTATAA130.10569105691056911No Hit
CCGCGGGGCCATTCGTAGGATGGGTGAGTCAGATGATTCCATTCTCCGAT130.10569105691056911No Hit
TGTGTTGAGTGACCTGTCAACTAAGCTGTCTTCAAACGCCCTTGTGTTCA130.10569105691056911No Hit
CCCTTTAAACGGTGGATTGAAAATGACTTTGATTTATAAAGAGAAGACTG130.10569105691056911No Hit
GTTATTATGACTCTGTATGATATTTGTGGCAGATTGCCTTTGTCCTTCAA130.10569105691056911No Hit
AGAGGGTTGTTTTAGGAGCATGCCACGGGAAAGACTGAGGGATCATGATC130.10569105691056911No Hit
GGGCTCAAGTGATCCACCCGCCCTGGCCTCCCAAAGTGCTGGGATTACAG130.10569105691056911No Hit
GTACCCAAGAGTGGCAAGGGCAAGAAGAAGTCCAAGCCAGTCAACAAAGA130.10569105691056911No Hit
ACATTGAAGACGTCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCT130.10569105691056911No Hit
ACTTTATCATCCGCTAAGAATTTAAAAATCACATTCTCTGTTCAGCTGTT130.10569105691056911No Hit
AAGCTGTACATATCACAAACAGGCAAATACTTGTTTTCCCAACCTGGATC130.10569105691056911No Hit
ACTTTGTAAGATGCAAAGAGGTTGGATCAAGTTTAAATGACTGTGCTGCC130.10569105691056911No Hit
ATATGATGAAGCAATTGACTGCTACACAAAAGGCATGGATGCCGATCCAT130.10569105691056911No Hit
GTGTAAAGAAGGAGCTCCTACAAAGAATAAGAACATTCCTTACTCAGCAT130.10569105691056911No Hit
GTTGAAAGACATGCTTTTATTTTTTTGTAAAACAATATAGGAGCTGTGTC130.10569105691056911No Hit
GCCTCAATTGCTGATATGTTATTGGAGACAGGCTTTTGAAACTGCTCCAG130.10569105691056911No Hit
GTCGACGGACACCATTTTAAGGCTCACAAGGCTGTTTTGGCTGCTTGTAG130.10569105691056911No Hit
CAAGAAAGCCTTTGAGGTGAAGGTGTATGAAAGTCATCATAACAGATGTT130.10569105691056911No Hit
GGTGGACCCTGTGACTGGAGACAAACTCACAGACCGCGACATCATCGTGC130.10569105691056911No Hit
ATATTGAAGCTGAGACTTACAATAACAAGTTGAGTGGCAAGCCTGGTATG130.10569105691056911No Hit
TTCAGTCTCAGTTCAGAAAATTCCAGAAGAAGAAGGCTGGGTCTCAGTCC130.10569105691056911No Hit
AACATACACTGTGCAAACTGTCCACAGAAAATATGTGCAGTTGATTCTAT130.10569105691056911No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)