FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002877922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12300
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4994.056910569105691No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG650.5284552845528455No Hit
ATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATGT300.24390243902439024No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG260.21138211382113822No Hit
GACGTGCAACTCAAAGACCTGGAAAAATGGCAGAATAATCTGCTTCCATCCCGCCAGTTTGGTTTCATTGT230.18699186991869918No Hit
GGCATTACTGTAGTCAGTCATTTTGGTTTTCTTCTATAGCCATTTTATTATTTTAGTGTATTAGTTATGAA230.18699186991869918No Hit
GCATACAGACTGGAAGAACAGCCCTGTATGGGTCCTTAGAAGCATCTATAGTGCACTGGGCAGGAGTACTG220.17886178861788618No Hit
GTTCTAAGACGTGGGATCGTTTCCAGATGAGAATTCACAAGCGACTCATTGACTTGCACAGTCCTTCTGAG220.17886178861788618No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT200.16260162601626016No Hit
CAGCTAAGTGAAGGATCAATTACACTTCAGGTTGAAGCAGTAGAGAGTACTTCACAAGTGGATGAAAATGA200.16260162601626016No Hit
CTATTTAAATCAGAACCCAATTTCTACGCGTGTTGAATAAGGTAACAGCCTTTGATGAATTTCCTTCACAA190.15447154471544716No Hit
GATTTAGGGTAGATAAGGCAGTGGCATTCTGACTCCATTAGTTTCTCTTTCTTCTTCTGGGAACAGTGTGC190.15447154471544716No Hit
CCTCATAGGCAGGCTAAACAAGTGTGGGGTGATCAGCCCCAGATTTGACGTGCAACTCAAAGACCTGGAAA190.15447154471544716No Hit
GATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCAC180.14634146341463414No Hit
CCTGTAGCCTGGCAAAAACGACATTTGATGAAGCAATTGCTGAATTGGATACGCTGAATGAAGAGTCTTAT180.14634146341463414No Hit
CTCTTGCCCTTCGCCTGTGTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGG180.14634146341463414No Hit
GTCCAAGATAGTATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAAC180.14634146341463414No Hit
GGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAA180.14634146341463414No Hit
CAGTCACGGAGGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGC180.14634146341463414No Hit
AGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTA180.14634146341463414No Hit
GGATCTCCTTCATCCCTCTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCA180.14634146341463414No Hit
AGGGAAAAAAGACTGAAATAAACTGAACAGAATATCCAAGAACTGTGGAACAACAATAGGTGTATCATATG170.13821138211382114No Hit
GGTGTTAATACTTTCAAAGTTCTTACAAGGGATAAACGTCTTGTACCCGGAGGTGGAGCAACAGAAATTGA170.13821138211382114No Hit
CTCCTAGGCTCTATCAGACTGACCCCTCGGGCACATACCATGCCTGGAAGGCCAATGCCATAGGCCGGGGT170.13821138211382114No Hit
CCCTCCTGTATAGAGCCACCATGATTCTTACAGTTGGTGGAACAGCATATGCCATATATGAGCTGGCTGTG160.13008130081300812No Hit
ATTAAGGAGAGATGACCTATCTTTAAGTGCAAGAAAGCCTTTGAGGTGAAGGTGTATGAAAGTCATCATAA160.13008130081300812No Hit
ATTTAATACAAGGCTGTTTAAGGTCAAAGAAAGACACTTGTTTCTTACCTATTTAGGAAGAGCACAGTATG160.13008130081300812No Hit
AAGCAGTGCTAGTAAATATTTCAAATGGATGATGGTTGAAATAAAAAAGAATGGGCCAGGTGCGGTGGCTC150.12195121951219512No Hit
ATGGAGTACAAGGGCTATCTGGTATCTGTAGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATA150.12195121951219512No Hit
GTGTATAACATTCACCTGGCTGTCAACTTCTTGGTGTCATTGCTCAAGAAAAACTGGCAGAATGCCCGGGC150.12195121951219512No Hit
GACCCAAACAAAAAAATAATAATCAAATGCCTTCAATTTCTGAGAAAATGAGGCAGAGCATGGAAAAGGAA150.12195121951219512No Hit
GTTTATTACTGAAGATTGATCCATTGTTGCCTAAAGAAGTAAAAAATGAAGAAAGTGAAAAAGAAGATGCC150.12195121951219512No Hit
GAGGGAGACCATACTAGGGCGACTCCTGTGTGACTGAAGTCCCAGCCCTTCCATTCAGCCTGTGCCATCCC150.12195121951219512No Hit
ATGTATGCATATATACATACGTATATATACAGTCGGGTCGAAACCACCCTACTGTTTTCAAATATGTGATG150.12195121951219512No Hit
CCCTGAGGCATCTGAGTCAACAACGGATGAAAATGAAGACGACATTCAGTTTGTCAGTGAAGGACCATTAC150.12195121951219512No Hit
TTCCAACTGTCAGCATGATTTCCAGGCTCCATATCTTCTACATGGAAAATATGTCAAAGAGCAGGAGCAGT150.12195121951219512No Hit
GTATATGGATTCTATGAAAAAATGTCCACAACACAGTAATTGGTCACTTGTTAAGAAAAATTTATCCTTGT150.12195121951219512No Hit
ATCCTGGCTAACACGGTGAAGCCCCGTCTCTACTAAAAAAAAATACAAAAAGTTAGCCGGGCGTGGTGGCA150.12195121951219512No Hit
GGCTTACTCCAACTGAAGTTAAGGATTACTTGGCTGCCATAGCATAACAATGAAGTGACTGAAAAATCCAG140.11382113821138211No Hit
TAATGATGGTGTCTGTACAGCATGGATGTGGACAGGGAAAACAGCAAGTGCACACAGTGGGACAGGCCACA140.11382113821138211No Hit
GCACTACATGTAAATTAAGCCCAAAGATGGGGAGAAAGGAAAAGGAGAGACAAATATAGTCCATACTGAGT140.11382113821138211No Hit
GGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGC140.11382113821138211No Hit
AATTTATGTAGTCTTTTGTGACTGGCTTCTTTTACTTAGGATGTTTTTAAGGTTCTTACTGTTGTAGGATG140.11382113821138211No Hit
GTGTAACATACTCCCCACAGTCTACTTTTACAAACGCCTGTAAAGACTGGCATCTTCACAGGATGTCAGTG140.11382113821138211No Hit
GCCATCACACTTGCTTATTGAATGTCTTGCTCATTATGATAGCTTAGTACTATGACCAGGAAACATCTCAA140.11382113821138211No Hit
GAGTATCAGCAAGAGCTGGAGAGGGAGCTTTTTAAGCTCAAGCAAATGTTTGGTAATGCAGACATGAATAC140.11382113821138211No Hit
TTCTGAAACTGGCCCAATTTCCTAACAAGCCGGATGCTTGAGAAACCTACATTTGGACAATGAGAGGCTGC140.11382113821138211No Hit
ATTCCAGCCTGGGCAACACAGTAAGGCCCTGTCTCTAAAAAAACTAAGCAAAACAATAATGAAACCCAGCT140.11382113821138211No Hit
GATTAAATATTTGAAGCAGGAACAACAGAAATTTTCCTGCAAATTAATGTCCCACACTAAACCACAGATTC140.11382113821138211No Hit
GGTTGACAGAGCAATATTCCATCTCAAAAAATAAAAAATAAAAATAAAAATACAGTCTGTTGGCAGTTAAT130.10569105691056911No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGC130.10569105691056911No Hit
GGCAGGCGCTGAGAAGGAGGCGCAGTCCATCTCTCTCAGGGTTAGTGAATGAGGCTCTCCGCCCGGGCCGG130.10569105691056911No Hit
GTATAAGTTTCGTGTGGCTGATCAAAGAAAGAAGGCATACGCAGATTTCTACAGAAACTACGATGTCATGA130.10569105691056911No Hit
ATATTGAAGCTGAGACTTACAATAACAAGTTGAGTGGCAAGCCTGGTATGCTGTGTCTTATTGCCAGAATC130.10569105691056911No Hit
GAATAATCTACCCTGACTAAAGCTTGAAATGCTACATTTCCAAGGTGAAGATGTGTGGGCACATGTTATGG130.10569105691056911No Hit
ACATTGAAGACGTCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTC130.10569105691056911No Hit
GAATACAAGTAGAATCACAGAGCTGAAGGAAGAAATAGAAGTAAAAAAGAAACAACTCCAAAACCTAGAAG130.10569105691056911No Hit
GTGCATATCTGAATCATTTGGAGAGTTTTGTGTGTGCACACAGGCATGCCCTCAGACATACTGAGTCATTG130.10569105691056911No Hit
GAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGAAGAAGCTGGGGATGGCACTACCACTGCTACT130.10569105691056911No Hit
TTATTGTATTTTTTGAAAAATTTATACTAGAACGTGGTATATATGTCTGTATACATTACGACCATTGTGAT130.10569105691056911No Hit
GGTGTGCACACACTCCTCTCAAGAGCTGCCATTTTATGTGTCTCTTGCACTACACCTCTGTTGTGAGGACT130.10569105691056911No Hit
GGGCTCAAGTGATCCACCCGCCCTGGCCTCCCAAAGTGCTGGGATTACAGATGTGAACCACCGTGCTGGGC130.10569105691056911No Hit
CTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAA130.10569105691056911No Hit
GGTGGACCCTGTGACTGGAGACAAACTCACAGACCGCGACATCATCGTGCTGCAGCGGGGCGGTACCGGCT130.10569105691056911No Hit
GAACAAAGATAAGGAAATGGCAGGAGTGTTGCAGAAAGCAGTGGTTTCTGAAGACACAGGTATAGGCAGAT130.10569105691056911No Hit
AGAGGGTTGTTTTAGGAGCATGCCACGGGAAAGACTGAGGGATCATGATCATTTGTTCAGAAAAAAAGCCC130.10569105691056911No Hit
AAGCAAAGGAGGAGAAAGAGAAGAAGATTTACTACCACCCATGGACCGGAACTAATATTAAAACTATATTT130.10569105691056911No Hit
GTCGACGGACACCATTTTAAGGCTCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTTCTACAAATTCTT130.10569105691056911No Hit
CTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAAT130.10569105691056911No Hit
TGTGTTGAGTGACCTGTCAACTAAGCTGTCTTCAAACGCCCTTGTGTTCAGAATTTGCCACAGTTCAGTGT130.10569105691056911No Hit
TCTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACCATGTTCATTATAATCTCAAAGGAGAAAAAAAACC130.10569105691056911No Hit
GTGAGAGACCGAATAGAGGGGCTGGGGCCACGAGCGCCATTGACAAGCAATGGGGAAGAAACAGAAAAACA130.10569105691056911No Hit
GATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGG130.10569105691056911No Hit
CCGCGGGGCCATTCGTAGGATGGGTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGATGGCATCG130.10569105691056911No Hit
GAGTATACACCATGAGCAAAGCTCACCCTCCCGAGTTGAAAAATGAAATTAAATGGTGGCAGACATGTCCA130.10569105691056911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)