FastQCFastQC Report
Wed 8 May 2024
EGAF00002877975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1241758
Total Bases88.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG137611.1081869414169265No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA70830.5704009960072736No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15560.12530621908616654No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)