FastQCFastQC Report
Wed 8 May 2024
EGAF00002877977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141402
Total Bases10 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13620.9632112699961811No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2310.1633640259685153No Hit
CTAGAGAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG2190.15487758306105995Illumina Single End PCR Primer 1 (100% over 41bp)
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1900.1343686793680429No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)