FastQCFastQC Report
Wed 8 May 2024
EGAF00002877981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1348281
Total Bases95.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG143331.0630573300372845No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA74090.5495145299829931No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19670.14588946962836383No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC17620.1306849239883971No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT14580.10813769533205617No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)