FastQCFastQC Report
Wed 8 May 2024
EGAF00002877983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002877983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences592492
Total Bases42 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51380.8671847046036065No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA21290.3593297462244216No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12580.21232354192124112No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)