FastQCFastQC Report
Wed 8 May 2024
EGAF00002878002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences633770
Total Bases44.9 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69041.0893541821165407No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA60920.9612319926787319No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12340.19470785931804913No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG11200.1767202612935292No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC11000.17356454234185903No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT10480.1653596730675166No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC8000.12622875806680656No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA7660.12086403584896728No Hit
GTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAATCA6490.10240307998169683No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)