FastQCFastQC Report
Wed 8 May 2024
EGAF00002878021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898713
Total Bases63.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG98841.0997949289706501No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA63220.703450378485679No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC21890.24357052807737287No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12710.1414244591988766No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT11700.1301861662176913No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG9780.10882228253068554No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)