FastQCFastQC Report
Wed 8 May 2024
EGAF00002878022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences272217
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30601.12410319708174No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5160.1895546567628032No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG5090.18698317886098223No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC3910.1436354085160001No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT3410.12526770921727887No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGA2770.10175705411491567No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)