FastQCFastQC Report
Wed 8 May 2024
EGAF00002878025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476196
Total Bases33.8 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39490.8292803803475879No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA30610.6428025434904955No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20340.42713504523347534No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC9360.1965577199304488No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT6120.12851850918529345No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG5580.11717864072776756No Hit
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGA4840.10163882098967651No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)