FastQCFastQC Report
Wed 8 May 2024
EGAF00002878028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences346815
Total Bases24.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36821.061661116157029No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC12890.3716678921038594No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA10950.3157302884823321No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC4090.11793030866600349No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT3510.10120669521214481No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)