FastQCFastQC Report
Wed 8 May 2024
EGAF00002878036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1403138
Total Bases99.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA84540.6025066671988073No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA37190.26504876925861887No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35870.2556412840362102No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC22980.16377576546284114No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG21350.15215894658971535No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT16420.11702341466056794No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC16330.11638199521358555No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA14100.10048904669391037No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)