FastQCFastQC Report
Wed 8 May 2024
EGAF00002878065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277640
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28451.024708255294626No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA13350.4808384958939634No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9840.3544157902319551No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTC6910.2488834461893099No Hit
GCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTCTTAACTATCCTAAC5480.1973778994381213No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA3960.14263074484944532No Hit
GCGACTTCTGAAGGGCCCCTTGCAAAGTAATAGGGCTTCTGCCTAAGCCT3950.1422705662008356No Hit
GCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGAAATAAAGCTTT3100.11165538106901023No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)