FastQCFastQC Report
Wed 8 May 2024
EGAF00002878088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1133105
Total Bases80.4 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG139321.2295418341636477No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA49620.437911755750791No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25900.22857546299769219No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC19460.17174048300907682No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTT14850.13105581565697796No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)