FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24751
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1390.5615934709708699No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG840.33938022706153287No Hit
ATATAGGACAGGGTCCCATATGATTATAATGGAGTATATTTGAGCCAGGCATGATGGCTCATTCCTATAAT450.18181083592582117No Hit
TCCCTACACGACGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA380.15352915033736012No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA360.14544866874065696No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACG350.14140842794230535No Hit
ATATCAGTGTTGTCTCATAGAACTGCCTGGATTCCATTTATGTTTTTTCTGATTCCATCCTGTGTCCCCTT270.10908650155549271No Hit
GAATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAAGAAAAAAGATAAATTTAAACCTGA270.10908650155549271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)