FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56600
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1540.27208480565371024No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1210.2137809187279152No Hit
CTTATATCACTTGCAAATAGAGATAGTTTTACTTCTTCCTTTCTAATTTGGATTTATTTTATTTCTTTTTC760.13427561837455831No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGC740.13074204946996465No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGACAG740.13074204946996465No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATT690.12190812720848057No Hit
GTTATATACTCCTGGATTATAGATTAAAAGTCTCTGTAGACATCTCTGTGAAGAGCAAGCTATCATTAAAC680.12014134275618374No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATG660.11660777385159012No Hit
AGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAG650.11484098939929328No Hit
GTATGTATCTGTGTCATCGATCTCCTTAAGAAGAGACTCGTAGATATTGACTGGGAGACCCAAGCTGAATG630.11130742049469963No Hit
GATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTA590.10424028268551236No Hit
GTTCAGAACTGTTTAATAGCAGTTACTCTTGAGTGTATTTACCTTTTTATGTTTTTTAAACTATTTTCCTT580.10247349823321555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)