FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49738
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1810.36390687200932886No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1750.35184366078250034No Hit
GGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCAAG670.13470585869958585No Hit
GTCTAAAAGTTTGTGCTTATTTTCTTGTAAATTTGAATATTGCATATTGAAATTTTTGTTTATGATCTATG520.10454783063251437No Hit
TTCTCATCTAGGCCACAAGCTGTTCAAGGAGGAAAAGCTTTAATGTGTGTTCTTCGTGCTTTGAGCAAAAA520.10454783063251437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)