FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18036
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9465.2450654247061435No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG870.4823685961410512No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG490.27167886449323575No Hit
CCCTGGGAGACAGTGATAATGAAAGCTAAGCCTCGGGCTAATTTCCCCATAGCCGTGGGGTGACTTCCCTG340.18851186515857177No Hit
ATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGG330.18296739853626082No Hit
ATATAATATAATAAAGCACAGTTTAGAATTGTTTTCGTAATAGTGCATTCCATAGTACTAGGCCATAAAAT280.15524506542470615No Hit
CTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATC240.1330671989354624No Hit
GCTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTGCCAC240.1330671989354624No Hit
CAACTAAAGCGCCAGCCTGCTCCACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCCTGAGCT230.12752273231315148No Hit
GAGTCGAGAGTATAGACTTCCATTATGTAGTAATAGTACAATGGTTTTTAGCTTTTGATGGAGAAGACAAC230.12752273231315148No Hit
GGGTATAGACATCATTCTGGGTAGTTCTAGAGGATATCGCAACAAGTGCGTTTGAAGGTTCAGCACAGCTG230.12752273231315148No Hit
GTAGTACAAAATGGATATGATTTATTTCCTATAGAGCATTAATTTAATGGTGGTATAATTTAAATGAGAAG200.11088933244621868No Hit
CAAGACTACACCTAACTTAACTATATGTCTGTGCAAAGCAAAAACTACATGATTGCTGTCTCTTACTTAGG190.10534486582390774No Hit
GTGGAGGAGTCTGCTGGCTTGGTGGGTCTCAAGTTGCCCCATCAGCCTGGAGGGAAGGGCTGGGAGCCATG190.10534486582390774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)