FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13962
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8155.837272597049133No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG410.2936542042687294No Hit
GTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAGCAGCACTA260.186219739292365No Hit
GCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGA200.14324595330181922No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGAAGAGTCT190.13608365563672825No Hit
GGCCAAGAGAATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCCTCTC190.13608365563672825No Hit
GTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATAT190.13608365563672825No Hit
TCTTTAGGGTCAGTGGCCAATGGGGCACATTTGGCACTAGCTTGAGCCCAACTCTGGCTCTGCCACCTGCT190.13608365563672825No Hit
GTGTGGAAAGCGGCTGTGCAGACATTCAATTGTTATTATTATGTCCTACAAGCATTAATTAATTAACACAC190.13608365563672825No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATT190.13608365563672825No Hit
GGATGGGACTTTTGTCATTTCAAAGACATGATGTATGGGGATTAGAAAGAACTCAAGACACTCCTGCTTGA180.12892135797163728No Hit
GGATATACCGTTGTATTAAAAACAAGATAAAAAAGCTGCCAAGATTTTTGGCGAGTGGTTGGTCTGAAGTC180.12892135797163728No Hit
ATTTAACCATAAGCAGCAGCACGATCCAGAGATCCATTGCCATCAGTGATCTCACTAAAAATATACAGCTA170.12175906030654635No Hit
ACTCAGATGATAGTGACGAATGTCTGGCAGTGAGGACACATTTTGGCATTCTTGCTGACTCTGACAGAGTG170.12175906030654635No Hit
GGTTGATGACAACAAGAAACTAGGAGAATGGGTAGGCCTTTGTAAAATTGACAGAGAGGGGAAACCCCGTA170.12175906030654635No Hit
AGCTGGGCCTGGTGGCGGGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGACAGGAGAATGGCGTGAACC170.12175906030654635No Hit
CCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAA170.12175906030654635No Hit
GATGCGGCACCGATCCTTAGCCAGAGAACTCTCTGGAACCATTAAAGAGATCCTGGGGACTGCCCAGTCAG170.12175906030654635No Hit
CTCTACAAACACTTTAACCGACATGGGAAGTTTCGATAGAAGAGAAAGCTGAGAACTTCGGAAAAGGCTCA170.12175906030654635No Hit
GCCTCACGTGTTGCAAGAACAGTTTTGAGCCATTGTTAACAATGCCTTTTTTCTTCACATAAAGTAGTTGA170.12175906030654635No Hit
GGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGCTCTCGCCGGGCAGC160.11459676264145538No Hit
TTGTAAAACTGAGTGGCAGAATGTTTGCAATCATCATCATCCCCGGTGGGGCGCGGTGGCTCACTCCTGTA160.11459676264145538No Hit
TTCGTAGGATGGGTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGATGGCATCGTCTCAAAGAAC160.11459676264145538No Hit
GTCAACACCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTT160.11459676264145538No Hit
GTTTAAAATTATATCAGATTCGTTTACTTCGTTTATTATTTTACAGTAAATTTGAATAAATCTTAGGGGTC160.11459676264145538No Hit
GTCTATGAATAAGAGGTGGACACAACAGCAGTCTCCTTCAGCACGGCGTGGTGTGTCCCTGGACACAGCTC160.11459676264145538No Hit
GAAGTCCTTGCAAGACGCTGATGCTCAAGCTGTTGACATACTCATTGCCTACTTTAACACCTGTCAGAGAA160.11459676264145538No Hit
ACCATACCCAGCCAAAAATTTTTTTAGAGATGGGAATGGAATGATCTTGAATAGTGTTGGTGCCACCTATG160.11459676264145538No Hit
GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCAAGA160.11459676264145538No Hit
GCAAGTGAGCGGGCTGGAGGGTGTGCAGGACGACCTGTTCTGGCTGACCTTCGAGGGGAAGCCCCTGGAGG150.10743446497636443No Hit
ACGTAAAAATTGTGAAAGTAAAGAAGGAATAATCTACCCTGACTAAAGCTTGAAATGCTACATTTCCAAGG150.10743446497636443No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG150.10743446497636443No Hit
AGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAG150.10743446497636443No Hit
CCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATC150.10743446497636443No Hit
TGTGTTGCCAGTGCGGGCCAAGCTGGCCCAGCCTGGAGCTGGCGCTGTGCAGCCTCACCCCGGGCAGGGGC150.10743446497636443No Hit
CTCCATTCAGATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCC150.10743446497636443No Hit
GTGCTGCCAAGGGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCC150.10743446497636443No Hit
GTGCTGAACACCAAATCAACCTAATTAAGGTTGATGACAACAAGAAACTAGGAGAATGGGTAGGCCTTTGT150.10743446497636443No Hit
GAAATAGAATGTAGCATAGCTGGAGCACATGAAAAAATTGCTGAGTGCAAAAAGCAAATTCTTCAAGCAAA150.10743446497636443No Hit
ACACCCTGATTCGGCCTGATGGAGAGAAGAAGGCATATGTTCGACTGGCTCCTGATTACGATGCTTTGGAT150.10743446497636443No Hit
CATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAG150.10743446497636443No Hit
GCTCACCTGGATTTCCACTGTAATGAATATGGAACTTTACTTAAAAGCATTCCACTAGTGGAGTCATGGGA150.10743446497636443No Hit
ATTGCAGACACTGTTCTATTTAAGTGGTTATTTGTTTAAATGATGGTGAATACTTTCTTAACACTGGTTTG140.10027216731127346No Hit
CTCCAAGATGTTCCTGCGCGGGGACTCAGTCATCGTGGTCCTGCGGAACCCGCTCATCGCCGGCAAGTAGG140.10027216731127346No Hit
GTCTTGTCAGTCATTTCTGTTTACCTTTTTCTTCTGCCCAGAGTGTATTTGTGAAGAGTCTCTTATATTAT140.10027216731127346No Hit
ACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCC140.10027216731127346No Hit
CCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTCATTATT140.10027216731127346No Hit
AATATTCTCCAACCTGTGTGCCTGACATGATGGTTAAAGGGATTAAACAAAACAATAGTTTGTAATTTATT140.10027216731127346No Hit
CTCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAACCTGGTCCACATGGGTTGAAAAAAAAA140.10027216731127346No Hit
GGAATAAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCACC140.10027216731127346No Hit
GATATCTACTGTATAATTGCACCAAAGTACATTTGAAAGGAAGGTTTTCAATAGTGTAATACTGCAGCGAT140.10027216731127346No Hit
TATATATACTTTCAAACAAGCTAGCAAGGCTTTTATTATTACTTTTTTATTTGAAATATCTTATATATTTG140.10027216731127346No Hit
ATATATGCAGATCTAATGTAAAATCCAGAACTTGGACTCCATCGTTAAAATTATTTATGTGTAACATTCAA140.10027216731127346No Hit
GGAAAAGAATTAGAGCATCTTTCACACATTAAAGAAAGTGTTGAAGATAAGCTGGAATTGAGACGGAAACA140.10027216731127346No Hit
GTCCTAGCCAATGGTCTGGACAACAAGCTCCGTGAAGACCTGGAGCGACTGAAGAAGATTCGGGCCCATAG140.10027216731127346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)