FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2066
Sequences flagged as poor quality0
Sequence length71
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG844.065827686350436No Hit
GGTGAAAACATTTTACCGGATTATGGAATGTTTACCAGAACATGTTTTGATTCTTGAATGTACATAATAAT150.7260406582768635No Hit
GGAAAGAAGTATGCAGAAATGAGCAGTTCGCTCCTCCCTGATAAGAGTTGTCCCAAAGGGTCGCTTAAGGA150.7260406582768635No Hit
CCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCC150.7260406582768635No Hit
GGTATATTGTGACCAGACCCCGGGAGCGGCCCATGTAGAAAGAGAGAGACCTCATCTTTCATGCTTGCAAG140.6776379477250726No Hit
GCCCTTGCCCGCTCGGGTATGAAGATCGGGCGGATTGAGGATGTCACCCCCATCCCCTCTGACAGCACTCG140.6776379477250726No Hit
GACCAGGTATTGGTGGATTTATGGTGCGGCAAAGAAGTCGAACTGGGCAAGGGAAAACCAAAAGATCTGTG130.6292352371732818No Hit
GTAGTAATGACTGTGTTGACTTCAATTTTGGAGCGCAGTAGCTATGTTAAAGATGAACTATTTGGTCTCAT120.5808325266214909No Hit
CAATAAAAGTAAACACATACACACAAAACAGCAAACTTCAGGTAACTATTTTGGATTGCAAACAGGATAAT110.5324298160696999No Hit
GAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGC100.48402710551790895No Hit
TCCCTACACGACGCGGGCACTCTTTCCCTACACAACGGCATCCGAGATCGGAAGAGCGTCGTGTAGGGAAA80.3872216844143272Illumina Single End PCR Primer 1 (100% over 27bp)
CTTCTGTAATGGGTAATGCGTTTGATTGTTTGAGATTTTCTGTTTTTAAAAATGTAGCACTTGACTTTTTG80.3872216844143272No Hit
CTCAGTAGCTGTGGATAACTTTCCACAAGTAGATAAGGCCATGTTGATTGAGAGAATAGTTAGGCTGCAAA80.3872216844143272No Hit
GAAGGAGAATATTATATGACACCACGAGACTTCCTCTTCTCAGTGATGTTTGAGCAAATGGAACGTAAAAC80.3872216844143272No Hit
GATATAATCTGCCAGGCTATGTGACAGTAGGAAGGAATGGTTTCCCCTAACAAGCCCAATGCACTGGTCTG80.3872216844143272No Hit
ACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACAT70.3388189738625363No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATT70.3388189738625363No Hit
GTTGGTGAAGTTGAGGATAGCATTTTTAAAAAGAGAAAGGATGATGAGGACAGTTTTAGAAGACGACAAAA70.3388189738625363No Hit
GCCCCAGGATGCCGTGGGCCGCAGCCACTCAGGACTGTCAAAGGGCTCAGTGCTGTCAGAGAGGGACTACG70.3388189738625363No Hit
TTGCTATCCTTAAGATCCTAAACAAATCATCTTTGTCAGTTAAGTATAGTTGCGCAAAAATTGTTAAATCC70.3388189738625363No Hit
TTTTTTTTTTGTTCAAATGATTTTAATTATTGGAATGCACAATTTTTTTAATATGCAAATAAAAAGTTTAA70.3388189738625363No Hit
GGACAAATGGACCTGTAATTCCGGGTGTGACGAGAGAACGAGATTTACCTTCCTGAATTAAAAAACAGGTC60.29041626331074544No Hit
GCAGTACTGAGTATGGTGCTTGCTCTTTCACTTAACTGATAAGAGGGACATGCCTACTAGGAGTTTTTAAT60.29041626331074544No Hit
TTCATGATCACCTTAATGCTCATGAGACTATATTTATGATCAGTGAATAAAAATGTCAGAACTGTGACAAA60.29041626331074544No Hit
ACCTCGATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAG60.29041626331074544No Hit
ACGCGGGACTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAAAAAA60.29041626331074544No Hit
CCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCA60.29041626331074544No Hit
GACCAAGCGAGTCCTCCCTCCCAATTGGAAATATGAATCATCTACAGCCTCTGCCCTGGTCGCATAAATTT60.29041626331074544No Hit
ATGACAATCTTTGTTGTGTGTGCATTTTTATAATAAAACTGAAAATACTGCAAAAAAAAAAAAAAAAAAAA60.29041626331074544No Hit
CTCTTTCCCTACACAACGGCATCCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT60.29041626331074544Illumina Single End PCR Primer 1 (100% over 46bp)
GATTATGGGTCACAGAAAAAAGTGGGTTTTTTAGTTGAATTTTTTTTAACATTCCTCATGAATGTAAATTT60.29041626331074544No Hit
GTGTGAGAGCCAGGGTTACCTACTCTGCCAAGTGAGGACAAACTGCTAGGCTGTATCCCATAATTTCAGGA60.29041626331074544No Hit
GGGGAGAAGTGATATGGTGAAGGGAAGTGGGGAGTATTTGAACACAGTTGAATTTTTTTCTAAAAAGAAAA60.29041626331074544No Hit
TAGAAGGATGGCGCTCCCAGTGACTACTTTTTGACTTCTGTTTGTCTTACGCTTCTCTCAGGGAAAAACAT60.29041626331074544No Hit
TCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAG60.29041626331074544No Hit
ACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCT60.29041626331074544No Hit
TCTCCTATCTTTAGTGAAATCTTATGTGTAATTATTCCACCGTGGGAACAGAGAATACCTGTTTAGTGTTG60.29041626331074544No Hit
CATTAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60.29041626331074544No Hit
TGTTATAACTTATCCTTTAAAAACTATTTTAAACTTTATCCTTTCAGCTTTACTTAGTGCGATGTTTTAGA50.24201355275895448No Hit
GAGTAAGGGGCATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCA50.24201355275895448No Hit
GATTTATTTGGAGTGGAGGCATTGTTTTTAAGAAAAACATGTCATGTAGGTTGTCTAAAAATAAAATGCAT50.24201355275895448No Hit
ACTGTATTGTATGCAAATCTGTGATTGTTGGCAGTGTCATCTCTGAGAAACAGATAAATAAAGTTTATTTA50.24201355275895448No Hit
GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTAAAAAAAAAAAAA50.24201355275895448No Hit
ACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATC50.24201355275895448No Hit
TGCAAACAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGA50.24201355275895448No Hit
GTAACAATAGTCCACATGTCCCTGGCATCTGTTCAGAGCAGTGTGCAGAATGTAATGCTCTTTTGTAAGAA50.24201355275895448No Hit
GACAAAAAAAGAAATAGCCTCCAATGGGAAATATTTTAATTTAGGTTTTGTTTTTGTTTGGGGGTTTTTGT50.24201355275895448No Hit
GAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCC50.24201355275895448No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAAAAAAAAAAAAAAAAAAA50.24201355275895448No Hit
TCCTTAATGTGTAATTTACTTATTATAAGCATGATCTTTTAAAAATATATTTGGCTTTTAAAGCAAAAAAA50.24201355275895448No Hit
TTTAATGAACTATAAGACACACTAAAAGATGTTTGGATTTTAGATCGTTATAATGTAGTATTCAGGCCTTT50.24201355275895448No Hit
GTACCCACCCAGTTCAAACCCGTGTGTAAGGGTCAACTGTACAAAAAAGTTTGTGAAATAAACGTACTGGA40.1936108422071636No Hit
ATTGAGGGGCAACTCAGGATTTTAAGTTCCATAAAGTATTGAACCAACTCTAAAATGTTAACTCCTTAATA40.1936108422071636No Hit
CTCTTTCCCTACACGAACGGCATCCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGG40.1936108422071636Illumina Single End PCR Primer 1 (100% over 45bp)
CCACAGTGTGCCTGCAACCCAAGTGGCCTTATCCGTGCAGTGGTGGCAGTTCAGAAATAAAGGGCCCATTT40.1936108422071636No Hit
GATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATG40.1936108422071636No Hit
AAAAAGACCTTCCGCTTACTCTGTTTTGATTGCTATTAGTCCCAAAATAAATATACCTGGGAATAAAAAAA40.1936108422071636No Hit
GGAGAGAATCACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACCAAAAAAAAAAAAAAAAAAAAA40.1936108422071636No Hit
TTATTTATTCAGTCTGTTAATAATGGTCATTTAAGTTTTTCTCCAGTTGACAACTCTAAATAACATTGAGA40.1936108422071636No Hit
GACAATTAACAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGG40.1936108422071636No Hit
TTTCAGGATGAGAAACATTAACAATAAAAATTTGTAGTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.1936108422071636No Hit
TCCCTACACGACGCACCCCCGCCACGCAGTTAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.1936108422071636No Hit
GCACTTGCTTGGTCTTTTTCTTAGTCGTGTAGACAGTAATTTTTTTTTTCAGCTTCTATCAGTATAGCTCA40.1936108422071636No Hit
CCTTAACTCCATATATTCATCCACATCCAAAAGATTGGGTTGGTATATTCAAGGTTGGATGGAGTACTGCT40.1936108422071636No Hit
GGAGAGAATGAAGAGAAGTAAGCCGAGGGCGTCTTTGATTGTGTAGTAAGGGTGGAAGGTGATTTCAAAAA40.1936108422071636No Hit
CTGCTTTATCTCATGATGCTTGCTTGTAAAACTTGATTTTAGTTTTTCATTTCTCAAATAGGAATATTACC40.1936108422071636No Hit
TGCTAGAGGGGCTTAGAGAACTACAAGGCCTGCAGAATTTCCCAGAGAAGCCTCACCATTGACTTCTTCCC40.1936108422071636No Hit
GATTTTGACAAATAGAAGAGTGTCTACAGCGTGGTTTGCCTGTCTGCCCTCCTGGATGCTATTAAAGCTTT40.1936108422071636No Hit
GCAAAGCAGTCTGTAAAATTTCAGTCTCAAAGCAAACAAAAGAGTATTGAAGAGTGAAGTAAAATAAATAT40.1936108422071636No Hit
CTCTGGGGCCCTGCATTTATGAGGCACCTACCTTCATTTTGCTAACGCTTATTCTGAATAAAAGTTTTTGA40.1936108422071636No Hit
TCCCTACACGACGCGGGTTGACCGCTCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.1936108422071636No Hit
TATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAAAAAAAAAAAAAA40.1936108422071636No Hit
GGCTCATAGAGACTGGGTGTGGTTGCTCATGCCTGTAATCAAAGCACTTAGGGAGGCCGAGCCGGGTGGAT30.14520813165537272No Hit
GATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
GGGAAATATGCCCTATTGAATGTTTGCATTAAAAGTGTTTATATAACTTAGAAGCAGATGAATATTTCTAA30.14520813165537272No Hit
TCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC30.14520813165537272No Hit
TTGTAAAGGACTCCATTCGGCTGGTTAAAAGATGCACTAAACCTGATAGAAAAGAATTCCAGAAGATTGCC30.14520813165537272No Hit
GTGGTGCTGCTTTAATTCATAAATCACAAATAAAAGCCAATTAGCTCCAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
TACTTGTAGATAAAAGCCTAAAAGTGGATACAGTAAGTAGTGTTTTATTGAGAAATTAACTACAACTTCAA30.14520813165537272No Hit
TAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGAA30.14520813165537272No Hit
GAAAGAGAGAGACCTCATCTTTCATGCTTGCAAGTGAAATATGTTACAGAACATGCACTTGCCCTAATAAA30.14520813165537272No Hit
ATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTG30.14520813165537272No Hit
GGAGGTGGAGTGCTGCTAGGGCTGCAATAATGAAGGGCAAGATGAAGTGAAAGGTAAAGAATCAAAAAAAA30.14520813165537272No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT30.14520813165537272No Hit
CTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCA30.14520813165537272No Hit
GTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCC30.14520813165537272No Hit
GTTTCATTCACTTTACTTTTAAAAATTTGTCCTTAAATGAATAAATAAAATAAAAGTTGGTCCTGTGAGAG30.14520813165537272No Hit
TACCTCCTCAAAGCAATACACTGAATGTTTAGACGGGCTCACTTCACCCCATAAACAAAAAAAAAAAAAAA30.14520813165537272No Hit
TCCTATTACCATTCTCTGCAATAAACTCAAATCACATGTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
GTTTATAATGGTCAATTCACTGCTGATATTCAAGTGGACCGTTTAAACTGTATTTTTGCTCAGCTATCCCT30.14520813165537272No Hit
TCCCTACACGACGCGGGGAATATTCAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
ACACAAGGGTTTGTAAAAAAAAGAAAAAAGAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
GAATTTTCTTTTAAGCTAACAAAGATCATAATTTTCCATGATTAGCCGTGTAACTCCTGCAATGAATGTTT30.14520813165537272No Hit
ACTAGTTTCTGGGCAAATACACAACTGACTTGTAGTTTCAAAAGATTAAAAGTAGTGGCTGGGCGCAATGG30.14520813165537272No Hit
AGATAATTCTTCTGTGTGAAAATGTTTCTTTTTTTAATTTAAGGTTTAAAATTCCTTTTCCAAATCATGTT30.14520813165537272No Hit
GCATGATGTAAAAAATACAAACATTCTAATTAAAGGCTTTGCAACACAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
AATAAGATCAGACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
GTGTAATACTGAATAATTACTAAAAATGATTTTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
TCCCTACACGACGCGGGCACTCTTTCCCTACACAACGGCATCCGAGATCGGAAGAGCGTCGTGGAGGGAAA30.14520813165537272Illumina Single End PCR Primer 1 (96% over 27bp)
TCCCTACACGACGCGGGATACTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
ATAACATGCTGAGGGGTGACCTATATCCCATGTGAGTGGTCACTTTATTTATAGGATCTTTAAAACATTTT30.14520813165537272No Hit
GAAATAACCTATGTTGAACTTCAGAAGGAAGAAGCCCAAAAACTCTTGGAGCAATATAAGGAAGAAAGCAA30.14520813165537272No Hit
CATATATTGTTTACCTTCAAAGATACAATTAAATGGCTTGATTTTTAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
CCTTTCTTGCCTCCCCACCCCGGAAGCTGAACCTGAGGGAGACAACGGCAGAGGGAGTGAGCAGGGGAGAA30.14520813165537272No Hit
AAACTAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
ATCTTGTTTATAGTCATCTTTGTACTGTAATTTGATGTACACAACATTAAAAGTACTGACACCTGAAAAAA30.14520813165537272No Hit
GGCACACTGAGCACCTGCACTAAATTACTCAAAATGTGCTGTAAAGTTTCTTCTTTCCAGTAAAGACTAGC30.14520813165537272No Hit
GGTAAATGCATTGAACAAGTATATATAAAAAGAGATTAAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA30.14520813165537272No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGC30.14520813165537272No Hit

[WARN]Adapter Content

Adapter graph