FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16883
Sequences flagged as poor quality0
Sequence length71
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6483.8381804181721253No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG410.24284783510039684No Hit
GTATCTGGGTGTGGTGGCATATACCTGTAATCCCAGCTACTAAGGAGCCTGAGGCAGGAGAATCACTTGAA380.22507848131256294No Hit
CCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCC270.15992418409050524No Hit
GTCCTGCCCAGCACGCCATTTCAACTGAGAAAATCAAAGCCAAGTACCCCGACTACGAGGTCACCTGGGCT250.14807794823194928No Hit
GTATTAAGGATGCCCCTGCATACTATTATTCCGTTGTTACAAGAGGTAACTGACTGCTTTTTTCATTTCAG220.13030859444411538No Hit
GATTTATGAACTCTATAATAGAGTATATAGGTTTTGTACCTTTTTTACAGGAAGGTGACTTTCTGTAACAA210.1243854765148374No Hit
GCTCTGGAATGTATTCCTAGAAATTGGAACTTATTTATAATGGCCTACTTAATTGAGTTTTTTTTTTAATT210.1243854765148374No Hit
GGAAAGGAGAGGAAAGGATAAAAGGCAGAAGAGAGGAGAGGAAGGGAGAGAGAGAGAGAAAGAGAAAGAAG210.1243854765148374No Hit
GTGAATTAATTGCACTGCTAAGTAGGAAGATGTGTAACTTTTATTTGTTGCTATTCACATTTGAATTTTTT200.11846235858555944No Hit
TCCGTATAGTGATTGTAGCTGTTCCTCTGGATTCACCATCTGTTGAGTTGTAAATGTGAGAGAAAAAGTTA200.11846235858555944No Hit
CATTAGTGTGCTGTGTGGGGCAGTTCAACACAAATGTAACAATGTATTTTTGTGAATGAGAGTTGGCATGT200.11846235858555944No Hit
TTCCCTACACGACGCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC200.11846235858555944No Hit
AAAAGACCTGTGACTAGTGAGCTCTAGGCTGTAGAAATTTAAAAACTACAATGTGATTAACTCGAGCCTTT200.11846235858555944No Hit
CAACAAACACGGTATTGAGTTTAGTGTTATTAGCAGCTCTGAAGTCTAAACACTGGAAGAATTAACTGAAG190.11253924065628147No Hit
CTCCCACTCTTGAAGAGGAGGCCGCCTCCTCGGGGCTCCAGGCTGGCTTGCCCGCGCTCTTTCTTCCCTCG180.10661612272700349No Hit
TGTTCACACCCATGCACTTGTGCATAGGAAAAATAAGAAGGACTTCCCCAAAATCTTTTATTGGGTCTTAT180.10661612272700349No Hit
CTGATGCTGTTCTTCTTTCTCTTGCAGTATATGAGCTGGTTTAATGACTTCAAGTGCTTTTGCAAGTACTG180.10661612272700349No Hit
GTCTTTAAACAGCCATTCAGAAACAAAACTGTAGAACTGTGTATTTGATTGGGAATGGTGCTTTTGCCAAC180.10661612272700349No Hit
CCTTATTTGAATGTGTTTTTTTTTTTCCATGATGTCCAATTTTGTTGTGGGAAAGGATTTGGATAAAATTT180.10661612272700349No Hit
ATTCGAGCCATATAAATAAAACCTGTACTGTTCTAGTTGTTTTAATCTGTCTTTTTACATTGGCTTTTGTT180.10661612272700349No Hit
CTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCA180.10661612272700349No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAAT180.10661612272700349No Hit
CAAACATTATTCCATCATTTGTGTTGATGGATATCCAGGCTTCTACAGTGGTCACCTATGTGTATCAGCTA180.10661612272700349No Hit
TTCAGTATCTGAGTACTGGAAGTGAAACATGAGGAATGCTTTAGTGTAATGTGGGAGAACTTTTTTGTAAA180.10661612272700349No Hit
CAATGAAGATATTTTAGAGTACAAAAGAAGAAATGGGCTGGAATAAACTTTTGAAACACTAATGTAGTATG170.10069300479772553No Hit
CACTAATGTAGTATGCTCCGTATAGTGATTGTAGCTGTTCCTCTGGATTCACCATCTGTTGAGTTGTAAAT170.10069300479772553No Hit
GTGTAACTCCTTCATGCAATAAACTGAAAAGAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA170.10069300479772553No Hit
GGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAA170.10069300479772553No Hit
GTGCAGGAACTCTGGGGGCCCTGAAGGATTTGCTTCCCTCCCCTGGGAAGGCAGAGGGCTCTTAATAAAGA170.10069300479772553No Hit
CTCCTTCATGCAATAAACTGAAAAGAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA170.10069300479772553No Hit
CCCTTATATCCACTGGGATGTTTGGCGGAAGCTGTCTCAGTGATTCAGTCCATTCCAATATTCAATGAGAC170.10069300479772553No Hit
TCCCTACACGACGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA170.10069300479772553No Hit
TTATAGAACTACTAAAGTTCCAGTAGTTAGGCCATTCATTTAATGTGCATTAGGCACTTTTCTGTTTATTT170.10069300479772553No Hit
GCTATATGGGGAAGGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCCCTGGTTAGC170.10069300479772553No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT170.10069300479772553No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCG170.10069300479772553No Hit
GATGTGCTCTGGAATGTATTCCTAGAAATTGGAACTTATTTATAATGGCCTACTTAATTGAGTTTTTTTTT170.10069300479772553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)