FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11560
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA560.4844290657439446No Hit
TATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAATGTCACCACTATCTGGAGATT530.458477508650519No Hit
ATATAAATACTTGTACATATGATTTGTACTTCTGCTGTGAGATTCCCTAGTGTCAAAATTAAATCAATAAA240.20761245674740486No Hit
GCATTATACAGGAACACCCCTGTGCAGCTACGTTTACGTCGTCATTTATTCCACAGAGTCAAGACCAATAT230.198961937716263No Hit
GTACAAGATCCCAGACTGGTTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATACAGCCAGGTCCTAG230.198961937716263No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG220.1903114186851211No Hit
GGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATT220.1903114186851211No Hit
TGTCTAAGCACTGTATTAGGTAGTTACGTTGTCTCATTTAGTCTTTACAGCTGCCCCTGTGTGATTGATTT210.18166089965397925No Hit
GTATTAGGTAGTTACGTTGTCTCATTTAGTCTTTACAGCTGCCCCTGTGTGATTGATTTTTCATCCATTTT210.18166089965397925No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAG200.17301038062283738No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGC200.17301038062283738No Hit
CATTTAGTCTTTACAGCTGCCCCTGTGTGATTGATTTTTCATCCATTTTTCAGATATGTTACCTGAATCTC200.17301038062283738No Hit
ATTTACATTGTTCTAAATTCATAGAAAAATAACACAAATTCCCAAGTCTTTTTTTCTTTTTGAGACAGGAT180.15570934256055363No Hit
CACCTATACGGAGCACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCCCTGAAACGTCAGG180.15570934256055363No Hit
CTGCTGGAGCCTGGACACGTCCTACTTAAGAAAATGCCTTTTACTCAGGGAATCTCCTGCTACTTAATGTG160.13840830449826988No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGT160.13840830449826988No Hit
AATATACTGTGGTAATGAATATGACCAAAAGCCATAGATGACTGTGAGATGTGTGAGATATTAAAAGATAG150.12975778546712802No Hit
TTACAAAACCGGCTATTCGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTTATCTATGAG150.12975778546712802No Hit
AAATCAACCTATAAGAATACCAGCATTTTTAGCTGGGTGTAGTGGCACATGCCTGTAATTCCAGCTTCTTT150.12975778546712802No Hit
CTGAAGACCAAGGAAGTGGTCCTTCGGAAACAAAGCCTGTGGTTTCCATTTCCCGCACTCAGCTCGTGTAT150.12975778546712802No Hit
GGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTT150.12975778546712802No Hit
ACGCGGGGTGGTCCCAACTACTTGGAAGGCTGAAGCAAAGGATTGCTTGAGCCCAGAAGGTTAAGGCTGCT150.12975778546712802No Hit
CCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATC140.12110726643598616No Hit
TTCTTTCTAAGCAGTTTTGTGTGGGATAATTTGAAGAATATATTATGAGTAAACTCTGAAAATTTTGTTTA140.12110726643598616No Hit
CCTCAAGCCATGAAGTGTCAGCTGGAGAACAGTGGTGGGCATGGAGAGGATATGACATGAAATAAAAGATC140.12110726643598616No Hit
GCTTGAAGATGATGCTCAAGGTACTCTTCATGGACCACCATTCGCTGTTGGCAAGAAACGGCTTTACTTAC130.1124567474048443No Hit
CTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAG130.1124567474048443No Hit
ATAGAGGGCTGCGTCACTTCTGGGGCCTTCGTGTCCGAGGCCAGCACACCAAGACCACTGGCCGCCGTGGC130.1124567474048443No Hit
GCATAGGACTCCATAGTAATCGAATTTACCAGAGGCGAACGTCATGAGCATAGTGATCCCATTGGGGGTTG130.1124567474048443No Hit
CTCGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCCGTCACCTATACGGAGCACGCCAAG130.1124567474048443No Hit
GTACTAAGAAGGAAATTTATAGCAATAAACACCTATATCAGAAAAGTAAAAAGACATCAAATGCACAACCT130.1124567474048443No Hit
GTGCAATTGTGTGCATGTTTGTTTTTATGTTCCTTTAGAAAACATTGACTGTTACCATTGAATGAGATGGA130.1124567474048443No Hit
CCTATACGGAGCACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCCCTGAAACGTCAGGGG130.1124567474048443No Hit
GGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAA120.10380622837370243No Hit
CGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA120.10380622837370243No Hit
ACAAAAATGTTTCACAATTATAGCTGGAGATTTCAACATCTCTCAATGATTGATAAAACCAGTAGACAGAA120.10380622837370243No Hit
TTGTAGATGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTAAAAAAAAAAAAAAAAA120.10380622837370243No Hit
CACATATATAAAAAGTATAATTTTTCTATTTTTGTTTTTGGTTTTAATTTGCAGAGATTTGCTGCCAGGAA120.10380622837370243No Hit
TTCTTAGAGAACGTTATTCGAGACGCCGTCACCTATACGGAGCACGCCAAGCGCAAAACTGTCACAGCCAT120.10380622837370243No Hit
GGTGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTATTAAAATTAGA120.10380622837370243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)