FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50701
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21014.143902487130431No Hit
CAGTAAGAAAGAGGAACCAGTTTTAGAAAAAGTCACAACAGATCAGAGCAAGGAAGGCAAGCCAGAAGATC1130.222875288455849No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1030.2031518116013491No Hit
CTCTTAGAGGTCTCTTCATTATTGATGACAAAGGAATCCTAAGACAAATTACTCTGAATGATCTTCCTGTG670.1321472949251494No Hit
GTTTAATACTGCATTATTTATTTTCCTAAGGCTAAAGAGGAGCAGTCCTATGCTTTTATTCAGCATCCTTT640.12623025186879944No Hit
GTGTGTATATATCTGATTTGGGAAGAATTTAAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACTTTC570.1124238180706495No Hit
GTGTTGTACAAATGGTACCCAACACAAACTTTTTTTAAATTAGTAATACTTTTGTTTAAAGTTTTAAGTTT540.10650677501429953No Hit
GTATAAATGCTGAGTATGTCTGTTGAAGACGAGCAGAGATATTAAATTATAACCAACTTTCAATTTCCTGT520.10256207964339954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)