FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39882
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4691.1759691088711701No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1770.44380923724988713No Hit
CTTGGTAAATACGGCATCATCTGCATGGAGGATTTGATTCATGAGATCTATACTGTTGGAAAACGCTTCAA540.13539942831352492No Hit
GAGTTTTTTTGTGTGTGGTTTTTAAAACTGTTAAGGCAAGAAGTGTCAAATGCTTTAGAGTTAAATAACAG450.11283285692793742No Hit
GAGCTGGAGACAATGACAGGGGAGAAAGTCAAGACAGTGGTTCAGTTGGAAGGTGACAATAAACTGGTGAC420.10531066646607493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)