FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17154
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3852.2443744899148887No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1290.7520111927247288No Hit
GTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCACATTAAGCA380.22152267692666433No Hit
ATTCAGCACACCTTAAGTAGGGTGCTGGGAATATGTTGATGACTAAGATACTTAAGGACTTCATAGCCTAA350.20403404453771717No Hit
GTAACTCATAATCTATAAACAATGAAATATTGCTGTATAGCTCCTTTTGACCTTCATTTCATGTATAGTTT310.1807158680191209No Hit
GATAATTGGAATTTTTAAAGGAGATGAGAGTGAAAAAGGCCTAGAAGGTATATTTGAGGAAATAATGGCTG280.16322723563017372No Hit
GGACTGTAGGTGCGTGCCACCACATCTGGCTAATTTTTGTGTTTTTGGTGGAGACGGAGTTTCACTGTGTT260.1515681473708756No Hit
GTTTAGAGGAGGTAGGAGGGAAGAAATTGCAAAAGGTAATATTACTAGTGTGTTCATACTTGGACATTTTC260.1515681473708756No Hit
CTCATAGCACTGACTGCTCATAATTGGCTACTTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAAT250.14573860324122653No Hit
TAATAATACCAAGTAGCTCCTTTTATAAATGACCAGCAAACTCTATTAGGGGGGTAAGGTAAGATATAACT250.14573860324122653No Hit
GTATTTCGGCTGGAACAGAACGAAGACAGATGAATCTCTGTTTCCTGTATTAAAGCAACTCGATGCCCAGC240.13990905911157747No Hit
TCCAGGAACTTAGACCAACTTTAAATGAACTGGGAATCTCCACTCCGGAGGAACTGGGCCTTGACAAAGTG230.1340795149819284No Hit
AAATTAGCCAGGCGTGGTGGCGAGTGCCTGTAGTCCCAGCTACTTGGAGAGGCTGAGGCAGGAGAATGCCG230.1340795149819284No Hit
CTTGTCCAGGCTTCTTCCCATCCCAGCCACAGGAAATCTTTTCATTTCTCTTGGATTGTGAGCATTAGTGA230.1340795149819284No Hit
CCTTCACACTGTTCACTCCTCAGTCTGACTGCGGCTTCAACAATCTACGAAAAGTTATCTTTTCTCGTCAT230.1340795149819284No Hit
GTGTATAAGTACCTCTAGAACAATCACCTTTTTTCCATCAAGCTGTAGCCTGCAGAGAATGGAAACGTGGG230.1340795149819284No Hit
TACTTAACCTCTTCAAGCCCCAATTTCCTCAACCATAAAATGAAGATAATAATGCCTACCTCAGAGGGATG220.12824997085227935No Hit
TGACATAAGATTCCTCTTAAAGAGGAAATGTCAGGAATCAAGCCACTGAATCCTTAAAGAGAAAAGTTGAA220.12824997085227935No Hit
AACTGGGAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGA220.12824997085227935No Hit
CTCTGTGACTTCCTGGAGACTCACTTCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTGACCACCT220.12824997085227935No Hit
GTGATAGCAACCTGGATGAAGAAGAGAGCGAGGATGAATTCAAGATCAGTGATGGATCTCAAGATGAGTTT220.12824997085227935No Hit
CATCAAGTCTGTGACCGAACTCAACGGCGACATAATCACCAATACCATGACATTGGGTGACATTGTCTTCA220.12824997085227935No Hit
CTTATAGAAGGGGAGGGGGCAAAGGGCTTCTTCCTCAGGCCAGCTCTTCTGAGGAGGCTCTGCCCTCTCCA220.12824997085227935No Hit
GAATTTCCAAGTGAGGAATTTCCCTCTCTGGTATTCCATTGTCAAACTTGAGATTACACATAGGCCCCAGT220.12824997085227935No Hit
GTTTCTCAGAAGCAAATGTCAGACAGACGCGAAAATGACATGTCTCCAAGCAACAATGTGGTTCCTATTCA220.12824997085227935No Hit
GGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCC210.12242042672263029No Hit
GGTCTTGAACTCCTGGGCTCAAGTGATCCTTCTGCCCTGGCCTCCCACAGGGCTGGGAATACAGACATGAG210.12242042672263029No Hit
GTGGTGTGATCTTAATATATTTGAAAAAAACTTCATTCTCGTGAGTCATTTAAATGTGTACAATGTACACA210.12242042672263029No Hit
TGTTGGGCCTGTCCCTGTGGAAAGGAAGCTTATTTGCCTTATTGTCAGCTTTTATTGTATTAAAATACACA210.12242042672263029No Hit
CCATTAACAACTGCAGCAACCTCAGTTGGACAATCAGGATTCCCCAAGCCCCTGACTGCTCTCCCTTTTAC210.12242042672263029No Hit
CTGTTAAATGTGCCTGAAAAGCAATTTGCAATCTTTGCATTAGGCATTTCGGCCGTGGAACCCCAGGCTCG200.11659088259298124No Hit
ACAACTGGGTGTCTTCATCAGGGGGTTTACAAGGGAAGACAGACTAGTGATTTTAGAACAATCAGCAATCA200.11659088259298124No Hit
ATTTTGGACCTCTCAGCAACCTCCAGAACAATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAGTGT200.11659088259298124No Hit
TGTAAAAATAAAATCTAACTCTCATTTGACAAGCAGAGAAAGAAAAGTTAAATACCAGATAAGCTTTTGAT200.11659088259298124No Hit
TTTTATGTCTCATCTGTTTTTCCTTTCGGTTATATCTTTGGTTTTGAATACCAACATTTAAAATGATGGTA200.11659088259298124No Hit
GTTATTAAATGCTGTTCTTCTCTCCTAAGTTGAAAATCAGAAACTTGTGGAAAAGAGCACTTGAATGTTGG200.11659088259298124No Hit
CTCCCCGCATTCCCAAACGCCTACTTCCGCTCGCCAGTGGAAAACATCGTCACCAACTCTTTGTCCTGTGT200.11659088259298124No Hit
GTCTAGGAATACTCATTCTGGAAGTATTTAGACTAAGACACTATTTACTTGCCATGAGCTCTTGGGCACGT200.11659088259298124No Hit
CTGAAGAACAACAGTAATGATATTGTAAATGCGATTATGGAATTAACAATGTAACCATATGGAAGCAACTT200.11659088259298124No Hit
CTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGT200.11659088259298124No Hit
GCTACTCAGGAGGCTGAGATGGGAGGATCATGTGAGTTTGGGAGGCTGAGGCTGCAGTGAGCTGTGATCGC190.11076133846333217No Hit
CCCCCATAGAAGGATTTCATGAGCAGATCAGGACACTTAGCAAATGTAAAAATAAAATCTAACTCTCATTT190.11076133846333217No Hit
ACTTTATAGTGATTATTAACTTTGTAAATTGCTGATTTTGGTTAGAACTTATATTTAAATTTCTTTATATT190.11076133846333217No Hit
TTTCTATGCTGTTTGTAGTGAAATAATAGAATGAGCACCCATTCCAAAGCTTTATTACCAGTGGCGTTGTT190.11076133846333217No Hit
CAAAAGAGGTCTCTCTCTTGAAGGAATTAACTTGAGGGAATTAACATACTCCACCAAATGCTGAATCCCTC190.11076133846333217No Hit
GAATTTGATGAGCTGGTTAGAGAAAATGATCCCTCCCTAAGTCCTTTGAAAAAAACGACCACAAAGCAACA190.11076133846333217No Hit
ATGTAATGCTTGAATATGATATTGATGAAGCTCAGGCATTGTTGGAAAAGAATTTATCGACTGCCACAAAG190.11076133846333217No Hit
ATTATTAGCAGTCATACTGTAGCATAAGAAAATACCGTCTGCTGAAAGAGGGACAATAAAGATTATCTACA190.11076133846333217No Hit
GCGCCAGCAGGATGGCCCACAAGCAGATCTACTACTCGGACAAGTACTTCGACGAACACTACGAGTACCGG190.11076133846333217No Hit
GATGCAGTCATCATTTACATCTTCAGAACAAGAGCTAGAGCGATTAAGAAGCGAAAATAAGGATATTGAAA190.11076133846333217No Hit
CAAGTGGTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATCTGCATTTGCTACACCCTTCCTTGTAGTAA190.11076133846333217No Hit
GATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTA180.1049317943336831No Hit
ATGTATTGAGATTATTCTTGTTATCTTGACCTATTGATCTAATAAGTTGATTTCCTAATGACCTCTATTTG180.1049317943336831No Hit
GATCCCTAGAGCTATTCAGAGCCTAAAAAAAATAGTCAATAGTGCTCAGACTGGTAGCTTCAAACAGCTCA180.1049317943336831No Hit
TCACTGCGTCTACCGTGGCGGTGATATTGTGCTAGTTTTGCAACATGGAGGAATGGGTAAAGGGTACACAG180.1049317943336831No Hit
GAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGA180.1049317943336831No Hit
TATATTTATTACCCTGAACTGTATACTTAAAAATGATAAAGATAGTAAATTTCGTATGCGTGTGTGTGTTT180.1049317943336831No Hit
CTTATAACCCCAGCTGTGGTCTCTGAGAGACTGAAGATTCGAGGCTCCCTGGCCAGGGCAGCCCTTCAGGA180.1049317943336831No Hit
GTCCCCGCAATGATCCATTGTAGCCCCAGAAATTTACCTTTTCTTAAATCCTGACTGTACTGGAAAGAGTC180.1049317943336831No Hit
ATATTAGACTTGGAAAAAACTTGCAAAGAATTAAAGCATCAACTTCAAGTGCAGATGGAAAACACACTTAA180.1049317943336831No Hit
TCCCTACACGACGCGGGACCGAGGGTTCCTGGCTGTGAGGAAACAGCCACATGTTCGTCATGATTGAGCTG180.1049317943336831No Hit
TTCTACACGCGAGCTGCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGAC180.1049317943336831No Hit
GATTGAGGTGAAAGTCCATCTTGCTGATTTGATGATTGAAATGTGAAAGTGAAGTGGAAGGAATGAATGAA180.1049317943336831No Hit
ACCCGGCACTGAGTGACGATCAGCAAATACTCAGTGGACGAAATATTTGCAGTGCAGTGAGGTGAGGGGCA180.1049317943336831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)